PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02160g05037.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HD-ZIP
Protein Properties Length: 331aa    MW: 37212.2 Da    PI: 4.6149
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02160g05037.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.6e-1992145356
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               k++++t++q++ Le+ Fe+++++  e++ +LA++lgL+ rq+ +WFqNrRa++k
  Peinf101Scf02160g05037.1  92 KKRRLTDNQVQFLEKSFEEENKLEPERKVKLAQELGLQPRQIAIWFQNRRARWK 145
                               56689************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-1981149IPR009057Homeodomain-like
PROSITE profilePS5007117.84887147IPR001356Homeobox domain
SMARTSM003893.2E-1990151IPR001356Homeobox domain
PfamPF000461.7E-1692145IPR001356Homeobox domain
CDDcd000864.45E-1992148No hitNo description
Gene3DG3DSA:1.10.10.603.2E-2093154IPR009057Homeodomain-like
PRINTSPR000311.1E-5118127IPR000047Helix-turn-helix motif
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5127143IPR000047Helix-turn-helix motif
PfamPF021831.7E-14147188IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MMAPGMLYGA AAGASNFDGV LLQKHITTSS TTKEHLGSLF VPGPSPSFLG SSSMVSFGGA  60
NGGKKSRSFF DSFNQEDDEA DELGEYFHQA EKKRRLTDNQ VQFLEKSFEE ENKLEPERKV  120
KLAQELGLQP RQIAIWFQNR RARWKTKQLE KDYDALRKRY DTLKSDYNNL LKEKENLRAE  180
VLQLNDKLLL KEEENGQLAL SDIPKHSDAL PKAIMADPIS RIEMSQVSAG VLNQQQEDLS  240
SSKSDVFDSE SPRYTDGVHS TLIDQGDSAY VFEPEQSSDI SQDDDENFSK SMLSTASLLA  300
KAEDGYRVTS LNLSYFGFPV EEDHGIGFWS Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773747.11e-175PREDICTED: homeobox-leucine zipper protein HAT5-like
RefseqXP_016461905.11e-175PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBLA0A1S3ZBS71e-173A0A1S3ZBS7_TOBAC; homeobox-leucine zipper protein HAT5-like
TrEMBLA0A1U7W1391e-173A0A1U7W139_NICSY; homeobox-leucine zipper protein HAT5-like
STRINGXP_009773747.11e-174(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-40homeobox 1