PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02030g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | YABBY | ||||||||
Protein Properties | Length: 185aa MW: 20844.9 Da PI: 8.8557 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 189.2 | 2.1e-58 | 6 | 164 | 4 | 167 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvek 88 + +seq+Cy+ CnfCn +lavsvP + lf +vtvrCGhCt+l svn+a a q l+ +s ++++++ ++ + e ++ ++ Peinf101Scf02030g00008.1 6 DVASEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCTNLWSVNMAAAFQSLSNSSASSQNFHHVQVPNYTAPEYRMDLGSST 90 5689**************************************************9999988888888888888888888888888 PP YABBY 89 eesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 + ++++ + + +++n++e v v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aakn a ++h Peinf101Scf02030g00008.1 91 KCNNMRMTMRTPITNNTQERV-----VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNGAEKCPMH 164 777777777777777766665.....59*******************************************99887777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.0E-62 | 8 | 164 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.06E-6 | 103 | 155 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MASCIDVASE QLCYIPCNFC NIVLAVSVPC SNLFDIVTVR CGHCTNLWSV NMAAAFQSLS 60 NSSASSQNFH HVQVPNYTAP EYRMDLGSST KCNNMRMTMR TPITNNTQER VVNRPPEKRQ 120 RVPSAYNQFI KEEIQRIKAN NPDISHREAF STAAKNGAEK CPMHKLLRKI KKSSVYGEYF 180 LQAVC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ667744 | 1e-149 | KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009622268.1 | 2e-96 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 6e-69 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A068FJR2 | 4e-95 | A0A068FJR2_9SOLN; YAB5 protein | ||||
TrEMBL | A0A1S3Y3Q8 | 5e-95 | A0A1S3Y3Q8_TOBAC; axial regulator YABBY 5-like | ||||
STRING | XP_009622268.1 | 6e-96 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 3e-65 | YABBY family protein |
Publications ? help Back to Top | |||
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