PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01921g00008.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 358aa    MW: 39396.5 Da    PI: 6.7888
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01921g00008.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26047.36e-1523928356100
                    DUF260  56 damsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                                a++slvyeA++r+rdPvyG++g i++lqqq+++l+ael++l++e
  Peinf101Scf01921g00008.1 239 XAANSLVYEANVRLRDPVYGCMGAISTLQQQVQTLQAELNALRAE 283
                               689*************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003327.9E-381238IPR001932PPM-type phosphatase domain
PROSITE profilePS5174630.7711250IPR001932PPM-type phosphatase domain
SuperFamilySSF816061.83E-3916236IPR001932PPM-type phosphatase domain
Gene3DG3DSA:3.60.40.101.3E-4818236IPR001932PPM-type phosphatase domain
PfamPF004815.8E-3224233IPR001932PPM-type phosphatase domain
CDDcd001431.04E-4625234No hitNo description
PfamPF031952.1E-12239281IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDECSSQDFV HYAGFASEQQ SMSAEVIRKA FQATEEGFLS VVTKQWPLKP QIAAVGSCCL  60
VGVICSGTLY IANLGDSRAV LGRLVKATGE FLSIQLSAEH NASIESVRQE MQSLHPDDSQ  120
IVVLKHNVWR VKGIIQISRS IGDVYLKKAE FNREPLYAKF RLREPFRRPI LSSDPAILVH  180
HLQPHDQFII FASDGLWEHL SNQEAVDIVQ NHPRNEVPVG QRADAANSLV YEANVRLRXA  240
ANSLVYEANV RLRDPVYGCM GAISTLQQQV QTLQAELNAL RAEILRYKYR EAANTLIASI  300
STSVAELPQA PPTPSPPPPP SVVVVSSSST SSVSSLYTPP SNGAKFSPIP NNTIPYFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mq3_A4e-1751209195362Pyruvate dehydrogenase phosphatase 1
3n3c_A4e-1751209195362Pyruvate dehydrogenase phosphatase 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0136090.0BT013609.1 Lycopersicon esculentum clone 132379R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016452210.11e-139PREDICTED: probable protein phosphatase 2C 28 isoform X2
SwissprotQ9SD121e-121P2C46_ARATH; Probable protein phosphatase 2C 46
TrEMBLA0A1S3YJC81e-138A0A1S3YJC8_TOBAC; probable protein phosphatase 2C 28 isoform X2
STRINGXP_009781837.11e-138(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.16e-22LOB domain-containing protein 13
Publications ? help Back to Top
  1. Kerk D, et al.
    The complement of protein phosphatase catalytic subunits encoded in the genome of Arabidopsis.
    Plant Physiol., 2002. 129(2): p. 908-25
    [PMID:12068129]
  2. McCartney AW, et al.
    Membrane-bound fatty acid desaturases are inserted co-translationally into the ER and contain different ER retrieval motifs at their carboxy termini.
    Plant J., 2004. 37(2): p. 156-73
    [PMID:14690501]
  3. Schweighofer A,Hirt H,Meskiene I
    Plant PP2C phosphatases: emerging functions in stress signaling.
    Trends Plant Sci., 2004. 9(5): p. 236-43
    [PMID:15130549]
  4. Parizotto EA,Dunoyer P,Rahm N,Himber C,Voinnet O
    In vivo investigation of the transcription, processing, endonucleolytic activity, and functional relevance of the spatial distribution of a plant miRNA.
    Genes Dev., 2004. 18(18): p. 2237-42
    [PMID:15371337]
  5. Xue T, et al.
    Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis.
    BMC Genomics, 2008. 9: p. 550
    [PMID:19021904]
  6. Tovar-Mendez A,Miernyk JA,Hoyos E,Randall DD
    A functional genomic analysis of Arabidopsis thaliana PP2C clade D.
    Protoplasma, 2014. 251(1): p. 265-71
    [PMID:23832523]