PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf01889g15041.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 238aa MW: 26412.1 Da PI: 7.512 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.9 | 3.5e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 + +WT eE+e l+ +v+++G g Wk I + + R+ ++k++w++ Peinf101Scf01889g15041.1 5 KTKWTSEEEEALKAGVAKHGIGKWKNILKDPEfapflTIRSNIDLKDKWRN 55 579*********************************999**********99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.516 | 1 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-15 | 2 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-6 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-14 | 5 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-6 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 5.15E-21 | 7 | 56 | No hit | No description |
Gene3D | G3DSA:1.10.10.10 | 8.5E-11 | 111 | 172 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 4.0E-12 | 111 | 176 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 17.7 | 113 | 200 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 4.68E-11 | 114 | 172 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 1.4E-8 | 115 | 172 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence Send to blast |
MGNQKTKWTS EEEEALKAGV AKHGIGKWKN ILKDPEFAPF LTIRSNIDLK DKWRNMGIST 60 GIAQGSDDKS RFARVRPVTA TAPAIAQSSL AMTSVAEDEV TDYPSKSRKD GKNAPKYSEM 120 IFEALSSMRD SNASDLGAIV GFIETRHEVP QNFRRLLSST LRRLVLQGKL ERSIETIEEA 180 ARTAAYKVVD AENKSFVAAE AVKEAERVSK MAEDAELMLQ LVKDIYEQCL RGETVLLA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00231 | DAP | Transfer from AT1G72740 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009616026.1 | 1e-113 | PREDICTED: telomere repeat-binding factor 4 | ||||
Refseq | XP_016510058.1 | 1e-113 | PREDICTED: telomere repeat-binding factor 4-like | ||||
Swissprot | F4IEY4 | 5e-66 | TRB5_ARATH; Telomere repeat-binding factor 5 | ||||
TrEMBL | A0A1S4D9K5 | 1e-112 | A0A1S4D9K5_TOBAC; telomere repeat-binding factor 4-like | ||||
STRING | XP_009616026.1 | 1e-113 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2504 | 23 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72740.2 | 1e-50 | MYB_related family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|