PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01889g14044.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | RAV | ||||||||
Protein Properties | Length: 202aa MW: 23636.2 Da PI: 10.1324 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32 | 3.1e-10 | 29 | 77 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s++kGV ++g W A+I+ + k ++lg+f +++eAa a++++ k+++ Peinf101Scf01889g14044.1 29 SKFKGVV-GQRNGNWGARIYA------NhKMVWLGTFKSEKEAAMAYDKFLKEKYE 77 79****6.6779******999......44**********99***********9875 PP | |||||||
2 | B3 | 75.9 | 4.6e-24 | 92 | 185 | 1 | 84 |
EEEE-..-HHHHT.T-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f+k+l++sdv + +rl +pkkfa ++ + ++ +++++++ d+s rsW+++++y+++ +++vlt+GW++F +++gL+ Peinf101Scf01889g14044.1 92 FQKELSQSDVEIKlNRLLIPKKFALKYfpqicnnngEFQESKDVEMIFFDSSKRSWKFRYCYWRSNKSFVLTTGWNKFIEDKGLE 176 89*******97555********************997778899****************************************** PP TT-EEEEEE CS B3 76 egDfvvFkl 84 ++D vvF+ Peinf101Scf01889g14044.1 177 AKDRVVFSS 185 *******93 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.18E-10 | 29 | 75 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.5E-5 | 29 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.73E-14 | 29 | 69 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-10 | 30 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.838 | 30 | 69 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-6 | 30 | 78 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-29 | 88 | 187 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.06E-24 | 91 | 189 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.16E-19 | 91 | 183 | No hit | No description |
SMART | SM01019 | 1.8E-11 | 92 | 199 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-20 | 92 | 184 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.533 | 93 | 201 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MISSTTSSNH KSKKRSTNER KACSNMSGSK FKGVVGQRNG NWGARIYANH KMVWLGTFKS 60 EKEAAMAYDK FLKEKYEEGY PLKTLQCHKQ LFQKELSQSD VEIKLNRLLI PKKFALKYFP 120 QICNNNGEFQ ESKDVEMIFF DSSKRSWKFR YCYWRSNKSF VLTTGWNKFI EDKGLEAKDR 180 VVFSSSEYKI GPTKICMVFE ID |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 7e-20 | 91 | 186 | 13 | 103 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019257867.1 | 6e-70 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
Swissprot | Q9C688 | 1e-30 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | A0A1S4BTX1 | 2e-68 | A0A1S4BTX1_TOBAC; AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
TrEMBL | A0A1U7WBE0 | 2e-68 | A0A1U7WBE0_NICSY; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
STRING | XP_009771974.1 | 4e-69 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5252 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 1e-32 | RAV family protein |