PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01858g00011.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

HD-ZIP

Protein Properties

Length: 209aa MW: 24279.4 Da PI: 6.3068

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01858g00011.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.5	6.5e-20	55	106	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++eq++ Le+ F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k Peinf101Scf01858g00011.1 55 RKLSDEQVNLLEQSFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWK 106 5899***********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.844	48	108	IPR001356	Homeobox domain
SMART	SM00389	7.1E-19	51	112	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.57E-18	53	117	IPR009057	Homeodomain-like
CDD	cd00086	1.37E-16	53	109	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.6E-21	55	115	IPR009057	Homeodomain-like
Pfam	PF00046	5.1E-17	55	106	IPR001356	Homeobox domain
PRINTS	PR00031	8.3E-6	79	88	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	83	106	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.3E-6	88	104	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MNNHQVADDE MALISQYYPA IYTQLMVPQQ GEKKPRRRRK KNKGEASGSG VFRKRKLSDE 60 QVNLLEQSFG NEHKLESERK DKLASELGLD PRQVAVWFQN RRARWKSKKL EEEYSKLKSQ 120 HDTNVVEKCR LETEVLNLKE QLCEAEKEIQ RLLLERSDGN SPSVSSFSME AAMEPPFLGE 180 FGMEGLDNVF YAQDTNTYVQ GLEWVNLYV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	32	40	KKPRRRRKK
2	36	54	RRRKKNKGEASGSGVFRKR
3	38	55	RKKNKGEASGSGVFRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00473	DAP	Transfer from AT4G36740	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009590483.1	1e-115	PREDICTED: homeobox-leucine zipper protein ATHB-40
Refseq	XP_016433151.1	1e-115	PREDICTED: homeobox-leucine zipper protein ATHB-40-like
Swissprot	O23208	4e-79	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A1S3X037	1e-113	A0A1S3X037_TOBAC; homeobox-leucine zipper protein ATHB-40-like
STRING	XP_009590483.1	1e-114	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1289	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18550.1	1e-66	homeobox protein 21

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]