PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01851g00029.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | TCP | ||||||||
Protein Properties | Length: 340aa MW: 38447.6 Da PI: 7.7891 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 131.2 | 9.8e-41 | 118 | 264 | 3 | 131 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec.... 73 kkdrhski T++g+RdRR+Rls+++a++fF Lqd LGfdk+skt+eWLl+++k a+kel + s+ss sec Peinf101Scf01851g00029.1 118 SKKDRHSKITTAQGPRDRRMRLSLDVARKFFNLQDLLGFDKASKTVEWLLNKSKSAVKELEEGtstaniggaiSASSTSECevis 202 79**********************************************************9996777777766555557776665 PP TCP 74 ....eaesssssasnsssg.......kaaksaakskksqksaasalnlakesrakarararertrekmr 131 e++++ + +++++++ ++++ + a ++ +akesr++ararar rt +k Peinf101Scf01851g00029.1 203 giidESATNDI-------QkeqpiinSKKEKKKAKSSRIRAAINHPVVAKESRKEARARARARTLKKSL 264 54322222222.......13334553333333344444444445888899*************998865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-43 | 118 | 262 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.899 | 119 | 177 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 8.856 | 245 | 262 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MYPSNNYSPI SSSSNLYHMP SPSSIQYEHE LFQYFHDHHL LQPQQLQFLT TTADHHQNLD 60 DTNMAEEYSN KDTVISSTTT NNNNLEEDEK GCKNKKGHDM SSSTITSTIN KNKINKSSKK 120 DRHSKITTAQ GPRDRRMRLS LDVARKFFNL QDLLGFDKAS KTVEWLLNKS KSAVKELEEG 180 TSTANIGGAI SASSTSECEV ISGIIDESAT NDIQKEQPII NSKKEKKKAK SSRIRAAINH 240 PVVAKESRKE ARARARARTL KKSLNIGDES KLCNEADTLR SWKPYEESGS QGYTNKENVV 300 DDPDLVVTTG NWSPFTIINF HHNTEISHEH QFTNFQLWEA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ400106 | 0.0 | JQ400106.1 Petunia x hybrida putative transcription factor (TCP3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016506815.1 | 1e-113 | PREDICTED: transcription factor DICHOTOMA-like | ||||
TrEMBL | G0ZGI8 | 0.0 | G0ZGI8_PETHY; Putative transcription factor (Fragment) | ||||
STRING | XP_009592164.1 | 1e-108 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2482 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 6e-29 | TCP domain protein 12 |