PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01676g01010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | B3 | ||||||||
Protein Properties | Length: 120aa MW: 13694.7 Da PI: 8.7569 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.7 | 1e-13 | 12 | 97 | 9 | 98 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 d++k++ +lp k + +h +++ + +tl++ +W++kl +k + +++GW++Fv + gLkegD +vF+l + ++ +++ Peinf101Scf01676g01010.1 12 DNSKRRFRILPPKIL-QHL--PATAVSITLRN-GQIEWNMKL--NKFCAKRRFSGGWSKFVTDTGLKEGDGLVFELLkCNnENVKFK 92 455555556666666.663..45667799888.669******..777777789**********************554666888888 PP EEEE- CS B3 94 vkvfr 98 v++++ Peinf101Scf01676g01010.1 93 VQILD 97 88887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 3.3E-5 | 4 | 99 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.758 | 4 | 99 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.43E-13 | 10 | 97 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 9.4E-14 | 11 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.0E-11 | 12 | 97 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.3E-13 | 12 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MNIFQQNGHN YDNSKRRFRI LPPKILQHLP ATAVSITLRN GQIEWNMKLN KFCAKRRFSG 60 GWSKFVTDTG LKEGDGLVFE LLKCNNENVK FKVQILDGSF PEELLQELGE GTSDNPVDVL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006354559.1 | 1e-21 | PREDICTED: B3 domain-containing protein Os06g0112300-like isoform X2 | ||||
Refseq | XP_006359110.1 | 1e-21 | PREDICTED: B3 domain-containing protein Os06g0112300-like isoform X2 | ||||
STRING | PGSC0003DMT400004523 | 4e-21 | (Solanum tuberosum) | ||||
STRING | PGSC0003DMT400054093 | 4e-21 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1819 | 21 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 7e-08 | B3 family protein |