PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01648g03002.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 736aa    MW: 79572.8 Da    PI: 6.7332
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01648g03002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-07309329526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               +C+ f++ G C++Gd C +aHg
  Peinf101Scf01648g03002.1 309 PCPEFRK-GACRRGDMCEYAHG 329
                               8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.58E-1735163IPR020683Ankyrin repeat-containing domain
CDDcd002043.67E-1536162No hitNo description
PfamPF127965.3E-1071153IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-1783163IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.384159IPR020683Ankyrin repeat-containing domain
SMARTSM002480.004784114IPR002110Ankyrin repeat
PRINTSPR014152.6E-585100IPR002110Ankyrin repeat
PROSITE profilePS5008811.514119154IPR002110Ankyrin repeat
SMARTSM002487.6E-4119151IPR002110Ankyrin repeat
PRINTSPR014152.6E-5138152IPR002110Ankyrin repeat
SMARTSM003569.5E-6304330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981309331IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4309329IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643339363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MCTGPERSNS CSSTNQSITD SKSSMKGITK LTVETEDSFS SLLELASNND LEGFKRSIER  60
DATAIDELGL WLVRKKGSKQ IVNEERTPLM VAASYGSLDV LKLIISNPEV DVNRACGPNK  120
CTALHCATSG GSVNVVDAVK LLLSAGADPN VEDANGQRPA DVIVIPPRLP GARASLEEML  180
LNNSSDGSVG ECKLRVSVTT SNASSPVLSS SPENGSPYSP SDSLSSPMAS KFSDIPANSA  240
PEKKEYPIDP SLPDIKNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKYHYSCVPC PEFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTG CARRVCFFAH  360
TTEELRPLYV STGSAVPSPR SAASAASVMD MAAALNLFPG SPSAHSMMSP SAFNQPMSPT  420
ANGMSHSSAP WPQPNVPTLH LPGSNLQSSR LRSSLSARDI PPEDFNMLQD FDAQQLLLND  480
MACYSQARPN SASLNRSGRS KTLTPSNLEE LFSAEITSSP RYSDQAAASG VFSPSHKSAF  540
FNQFQQQQSM LSPINTNVFS PKNMEHPLLQ ASFGVSSPGR MSPRSMEPIS PMSARLSAFA  600
QREKQQQQLR SLSSRDLGSN NASSIVGSPV GGNSWSNWGS PNGKVDWSVN GSGLGHNMRR  660
SSSFEQLNNG EEPDLSWVQS LVKESPSEMK EKQQAAPNSG AAPSGEGSKN SSQIDSVDHS  720
VLGAWLEQMQ LDQLVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016434806.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A1S3X4Q40.0A0A1S3X4Q4_TOBAC; zinc finger CCCH domain-containing protein 30-like
STRINGXP_009799603.10.0(Nicotiana sylvestris)
STRINGXP_009599703.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]