PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01632g03025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | WRKY | ||||||||
Protein Properties | Length: 347aa MW: 38612.3 Da PI: 5.9849 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.4 | 6.9e-29 | 130 | 191 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g+++pr+YYrCt + gC ++k+v+rs+edp+++e+tY+g+H+++ Peinf101Scf01632g03025.1 130 LDDGFSWRKYGQKDILGAKYPRGYYRCTLRhvqGCLATKQVQRSDEDPTTFEVTYRGRHTCN 191 59**************************988889**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.055 | 125 | 188 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-27 | 127 | 191 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.22E-25 | 129 | 192 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-40 | 130 | 192 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-26 | 131 | 190 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010193 | Biological Process | response to ozone | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MDNTYGTDNG EFNRLVNELT QGRDLVQQLQ LHLNTPYSCS PETTRDFLLH NIQSKFDKAL 60 SLLNSSNSTI VPNLGMSDSP GSLTASPPHS EDSDRDLEPK DFATRKRKSS TPRWTKQVQV 120 CPGAPIEGTL DDGFSWRKYG QKDILGAKYP RGYYRCTLRH VQGCLATKQV QRSDEDPTTF 180 EVTYRGRHTC NQGGGAIANN MTPTAPVTIP QNQEPNNLGA GLGNEHQQLM SVSREILHNF 240 QKDLNISKDD FNFNTPNNMP FASFASSSDI NADQDYSYVP HNAMIPNNSF VENLSPAYNM 300 SSGTNSGSSS YFAMTSSQMK QHGSHDYQYN SMGYESNFPF DYQGSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-19 | 130 | 190 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 103 | 108 | TRKRKS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00525 | DAP | Transfer from AT5G24110 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 2e-35 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019239237.1 | 1e-161 | PREDICTED: probable WRKY transcription factor 30 | ||||
TrEMBL | A0A1J6JVL1 | 1e-160 | A0A1J6JVL1_NICAT; Putative wrky transcription factor 41 | ||||
STRING | XP_009801586.1 | 1e-155 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11743 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24110.1 | 1e-50 | WRKY DNA-binding protein 30 |