PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01617g01012.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 264aa    MW: 28853.4 Da    PI: 8.4003
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01617g01012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001112134123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ykC+ C+ksF +   L  H  +H
  Peinf101Scf01617g01012.1 112 YKCNVCNKSFHSYQALGGHKASH 134
                               9*********9988888887776 PP
2zf-C2H2110.0014164186123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++C+k+Fs+   L  H r+H
  Peinf101Scf01617g01012.1 164 HECSICHKCFSSGQALGGHKRRH 186
                               78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.1E-4108136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.91E-7108138No hitNo description
PROSITE profilePS5015710.575112139IPR007087Zinc finger, C2H2
PfamPF139129.4E-13112135IPR007087Zinc finger, C2H2
SMARTSM003550.0065112134IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
SuperFamilySSF576671.32E-5161188No hitNo description
PfamPF139129.6E-10164188IPR007087Zinc finger, C2H2
SMARTSM003550.4164186IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.577164186IPR007087Zinc finger, C2H2
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MTLEALNSSS TPTTSKPTTI PLPPKPIYDA IDIHKRKRSK RPRIETPPSE EEFLALCLIM  60
LARSGGKNPT TTPTTITNEP LKIQEPINKP LQIQEPIDKP LQIQEPINEQ SYKCNVCNKS  120
FHSYQALGGH KASHRNKNLS TTTVSYDDTN PSTSNSLNPS GRFHECSICH KCFSSGQALG  180
GHKRRHYEGN LGGGSSRGDG VTSSEGGGSA VVRRDFDLNL PPSPELTLGM SVDCERKSQL  240
SGDQEVESPM PTKKPRLCFS IEGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankPETZFDB30.0D26085.1 Petunia x hybrida gene for zinc-finger DNA binding protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018625967.14e-90PREDICTED: zinc finger protein ZAT10-like
TrEMBLQ408981e-162Q40898_PETHY; Zinc-finger DNA binding protein
STRINGXP_009599610.12e-89(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.16e-37salt tolerance zinc finger