PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01556g11058.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | Nin-like | ||||||||
Protein Properties | Length: 231aa MW: 26141.2 Da PI: 4.9056 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 83.6 | 1.9e-26 | 144 | 192 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +s e++skyF++pi++AAkeL+++lT+LK++CR++GI+RWPhRk+ sl Peinf101Scf01556g11058.1 144 MLSRETISKYFYMPITQAAKELNIGLTLLKKRCRELGIRRWPHRKLMSL 192 6899******************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.961 | 124 | 215 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 8.0E-22 | 145 | 192 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MASQSNFEKM SKEDDHQDVF SLATQLPSLD FSGYYSGYCA ADYQYDLSIQ EGAFDTNPLE 60 MFFDDSLYSS FYRELDYGDL GSGLIAWNET AEFGLLSTEH GTGNHQLLLC DKNQEIMITN 120 GVENKEGSPK QEADDSNIYC SSRMLSRETI SKYFYMPITQ AAKELNIGLT LLKKRCRELG 180 IRRWPHRKLM SLETLIKNVK GRKWSGAKVE RSGKAIGEGE EDAGRNSRQA T |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 6e-53 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016459710.1 | 7e-77 | PREDICTED: protein RKD1-like | ||||
TrEMBL | A0A1S3Z5F8 | 2e-75 | A0A1S3Z5F8_TOBAC; protein RKD1-like | ||||
STRING | XP_009778708.1 | 5e-75 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4274 | 21 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 5e-31 | RWP-RK domain-containing protein |