PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01556g09036.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 336aa MW: 38375.2 Da PI: 7.9858

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01556g09036.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.5	1.5e-54	18	144	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeel+++yL kkv ++++++ +i +vd++kvePw+Lp k+k +ekewyfF+ rdkky+tg r+nrat++gyWka Peinf101Scf01556g09036.1 18 LPPGFRFHPTDEELITHYLSKKVVDTNFSA-IAIGDVDMNKVEPWELPWKAKIGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKA 101 79***********************999.88***********98999**************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 tgkdke+++ +++lvg+kktLvfykgrap+gekt+Wv heyrle Peinf101Scf01556g09036.1 102 TGKDKEIFR-GKSLVGMKKTLVFYKGRAPRGEKTNWVTHEYRLE 144 *****.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-61	14	168	IPR003441	NAC domain
PROSITE profile	PS51005	58.36	18	168	IPR003441	NAC domain
Pfam	PF02365	7.5E-28	19	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MENISGAVKE DDQQQMELPP GFRFHPTDEE LITHYLSKKV VDTNFSAIAI GDVDMNKVEP 60 WELPWKAKIG EKEWYFFCVR DKKYPTGLRT NRATAAGYWK ATGKDKEIFR GKSLVGMKKT 120 LVFYKGRAPR GEKTNWVTHE YRLEGRLSLH NLPKTAKNDW VICRVFQKTT GGKKIHISGL 180 MRSDSTGDEM GNSILPPLTD SSPYNNRTKP TTSEPSHVHC FSNFLTSQKS QEDMINYFTT 240 SANFPALSNP MDIFPRNSFS WNQTVPVQHN YPQPGSFPVQ DPSALRNLLE SYGQNMQQSF 300 KQEKDMVSVS QETGLSTDMN NEITSVQQDL DCLWSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	3e-55	6	174	8	174	NAC domain-containing protein 19
3swm_B	3e-55	6	174	8	174	NAC domain-containing protein 19
3swm_C	3e-55	6	174	8	174	NAC domain-containing protein 19
3swm_D	3e-55	6	174	8	174	NAC domain-containing protein 19
3swp_A	3e-55	6	174	8	174	NAC domain-containing protein 19
3swp_B	3e-55	6	174	8	174	NAC domain-containing protein 19
3swp_C	3e-55	6	174	8	174	NAC domain-containing protein 19
3swp_D	3e-55	6	174	8	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009625550.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Refseq	XP_016463159.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-135	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1S3ZFN4	0.0	A0A1S3ZFN4_TOBAC; NAC domain-containing protein 100-like
STRING	XP_009625550.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-138	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]