PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01533g01033.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NAC
Protein Properties Length: 406aa    MW: 46324.2 Da    PI: 6.6903
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01533g01033.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.49.9e-52151431128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgy 82 
                               +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePwd+++k++     +++wyfFs++dkky+tg+r+nrat++g+
  Peinf101Scf01533g01033.1  15 VPPGFRFHPTEEELLHYYLRKKVAYEKIDL-DVIRDVDLNKLEPWDIQEKCRIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGF 98 
                               69****************************.9***************964443122456************************** PP

                       NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               Wkatg+dk ++s + + +g++ktLvfykgrap+g+k+dW+mheyrl
  Peinf101Scf01533g01033.1  99 WKATGRDKVIHS-NCKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 143
                               **********99.8889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.14E-5711175IPR003441NAC domain
PROSITE profilePS5100556.30815175IPR003441NAC domain
PfamPF023651.7E-2716143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0010047Biological Processfruit dehiscence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MSKDMNLSVN GQSQVPPGFR FHPTEEELLH YYLRKKVAYE KIDLDVIRDV DLNKLEPWDI  60
QEKCRIGSTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVIHS NCKRIGMRKT  120
LVFYKGRAPH GQKSDWIMHE YRLDDNTSPQ EAVNVNASES STSEEGWVVC RVFKKKNYHK  180
ALESPHHQSS SAVISMNSRT LIQKPNHDGV LDQILMYMGR SCKQQDENYK HSSQLVNNIN  240
NIHLDYDHDI QMNGNTFINS SSGRFVHLPG LENHDHSPTN MELIQQDCSF GHEMYTETEQ  300
PCDGPKNRAS GAEGLSDWVA LDRLVASQLN GHMESTSNEN NNLYFPLHNT NNGLQLAAHH  360
LRTNGRPNDE DDSFSQSQAH DDGVEFWSYA RSSSSSPSDP LCHLSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-491217714167NO APICAL MERISTEM PROTEIN
1ut4_B3e-491217714167NO APICAL MERISTEM PROTEIN
1ut7_A3e-491217714167NO APICAL MERISTEM PROTEIN
1ut7_B3e-491217714167NO APICAL MERISTEM PROTEIN
3swm_A4e-491217717170NAC domain-containing protein 19
3swm_B4e-491217717170NAC domain-containing protein 19
3swm_C4e-491217717170NAC domain-containing protein 19
3swm_D4e-491217717170NAC domain-containing protein 19
3swp_A4e-491217717170NAC domain-containing protein 19
3swp_B4e-491217717170NAC domain-containing protein 19
3swp_C4e-491217717170NAC domain-containing protein 19
3swp_D4e-491217717170NAC domain-containing protein 19
4dul_A3e-491217714167NAC domain-containing protein 19
4dul_B3e-491217714167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00321DAPTransfer from AT2G46770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774438.10.0PREDICTED: NAC domain-containing protein 43-like
SwissprotQ84WP61e-117NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A1U7W7450.0A0A1U7W745_NICSY; NAC domain-containing protein 43-like
STRINGXP_009774438.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.11e-108NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]