PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01427g04003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 471aa    MW: 51883.7 Da    PI: 4.5838
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01427g04003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.73.5e-1091054703373
                      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                               + L+ecA+ v+++dle a + ++rl+e +s++gdp++R+ +yf+eAL ++l+ + ++l+    +s+   ++++e +  +k+f+++
  Peinf101Scf01427g04003.1 105 KSLVECAK-VADSDLEIALKSITRLRESVSQHGDPTERVGFYFLEALYNKLSCELEKLS----TSS---TTTEELTLCYKAFNDA 181
                               689****9.8899***************************************9333333....333...347899999******* PP

                      GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfA 169
                               +P+ kf+hltaNqaIlea+e+++r+Hi+Df+i +G+QW+a+lqaLa+R++g+p s+Ri g+ s   g   + +l +tg+rL++fA
  Peinf101Scf01427g04003.1 182 CPYSKFAHLTANQAILEATEKATRIHIVDFGIVHGIQWAAFLQALATRSSGKPvSIRISGIPSVLLGdtPAASLLATGNRLRDFA 266
                               *************************************************88888*********776688999************* PP

                      GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                               + l+++fef++ + + +e+l+ +++r++p+E+laVn++lql++llde+    +   + L+l ksl+P +v++ e e+++n+  Fl
  Peinf101Scf01427g04003.1 267 KLLDLNFEFEA-ILTPVEELNESSFRIDPDEMLAVNFMLQLYNLLDETSVGVE---TALNLAKSLNPSIVTLGEYEVSLNKVGFL 347
                               ***********.799******************************77766666...9**************************** PP

                      GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqa 337
                               +rf +aleyys++f+sl+ +l r+s er+ vEr llgr+i+ ++  +++   rre +e +e+W+e +e aGFkpv+ls++a++qa
  Peinf101Scf01427g04003.1 348 QRFKNALEYYSTVFESLDPSLTRDSPERVQVERLLLGRRISGALVGQEDVgtRRECMEDKEHWKELMEGAGFKPVTLSHYAMSQA 432
                               *****************************************887766654469******************************** PP

                      GRAS 338 klllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373
                               k ll +++ s  y + ++   ++ l W+d+pL++vS+W
  Peinf101Scf01427g04003.1 433 KILLWNYNySSSYGLIDSPPGFLsLAWNDKPLLTVSSW 470
                               ********9999998877665555************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.10477449IPR005202Transcription factor GRAS
PfamPF035141.2E-106105470IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MESLMGGGDS TESSNLQSGC DAWQTSSEFT PLYADPFTSC PSRLSTGCSE SLVGAIFSET  60
QKNLNLNPVW VPPSSAPAIQ ESKLVSSVDV SSTFPELFSS KPVLKSLVEC AKVADSDLEI  120
ALKSITRLRE SVSQHGDPTE RVGFYFLEAL YNKLSCELEK LSTSSTTTEE LTLCYKAFND  180
ACPYSKFAHL TANQAILEAT EKATRIHIVD FGIVHGIQWA AFLQALATRS SGKPVSIRIS  240
GIPSVLLGDT PAASLLATGN RLRDFAKLLD LNFEFEAILT PVEELNESSF RIDPDEMLAV  300
NFMLQLYNLL DETSVGVETA LNLAKSLNPS IVTLGEYEVS LNKVGFLQRF KNALEYYSTV  360
FESLDPSLTR DSPERVQVER LLLGRRISGA LVGQEDVGTR RECMEDKEHW KELMEGAGFK  420
PVTLSHYAMS QAKILLWNYN YSSSYGLIDS PPGFLSLAWN DKPLLTVSSW H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1551004711375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340610.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A0V0ILP80.0A0A0V0ILP8_SOLCH; Putative scarecrow-like protein 4-like
TrEMBLM1B7410.0M1B741_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000385740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89052429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-180GRAS family protein