PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01427g00012.1
Common Name12.PETUNIA.6
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 510aa    MW: 52953.5 Da    PI: 7.6175
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01427g00012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.1e-054466123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C++C+k F r  nL+ H r H
  Peinf101Scf01427g00012.1 44 FVCEICSKGFQRDQNLQLHRRGH 66
                              89*******************88 PP
2zf-C2H214.50.0001120142123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC +C+k +  +s+Lk H + +
  Peinf101Scf01427g00012.1 120 WKCDKCSKKYAVQSDLKAHSKIC 142
                               58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.0E-74366No hitNo description
Gene3DG3DSA:3.30.160.606.1E-54366IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0364466IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8874466IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
SMARTSM0035519085115IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-5108141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.0E-7115140No hitNo description
PROSITE profilePS501578.746120148IPR007087Zinc finger, C2H2
SMARTSM0035566120140IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MPADNSSAMN DNSTGSGEAS VSSSDPDAEV IALSPTTLLA TNRFVCEICS KGFQRDQNLQ  60
LHRRGHNLPW KLRQRSSKEV KKRVYVCPEP TCVHHDPSRA LGDLTGIKKH FCRKHGEKKW  120
KCDKCSKKYA VQSDLKAHSK ICGTREYKCD CGTLFSRRDS FITHRAFCDA LAQESAKALP  180
EEHPNANEEP NNQAIASPSP PPTPPAPPAA ADSQLPPTLP PPPAASMPIP PAAVPPSTAV  240
ISFVSPVQNP VSAELRESSN TDSAGTGTNH VMEETAALVS LTGSCSSSSN SCSNGSTSSS  300
VFGSVFASST ASGSMPSQAP GFTGLFQAMA PDRVAEMAPP SSTEPISLCL AMSQGSSIFR  360
PAGQERRQYA PVPQPAMSAT ALLQKAAQMG AAATSSSLLR GFGVMSSTSS SHGKQDWNGR  420
PIDTDGASLA AGLGLGLPCD AGSGLKELML GTPSVFGPKH PTLDLLGLGM AANGGPAPGL  480
SALITSMGSN LDMASFGSAD FSGKDLGRNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-32116177364Zinc finger protein JACKDAW
5b3h_F5e-32116177364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5177930.0EF517793.1 Petunia integrifolia subsp. inflata BAC 126I14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009590472.10.0PREDICTED: protein indeterminate-domain 2-like
RefseqXP_016471017.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-160IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA9XLF20.0A9XLF2_PETIN; Uncharacterized protein
STRINGXP_009590472.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.12e-94indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Wang Y, et al.
    Sequencing and comparative analysis of a conserved syntenic segment in the Solanaceae.
    Genetics, 2008. 180(1): p. 391-408
    [PMID:18723883]
  2. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]