PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01380g03014.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 310aa MW: 34033.8 Da PI: 9.4884

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01380g03014.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.8	2.9e-14	96	140	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky Peinf101Scf01380g03014.1 96 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 140 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.67	89	145	IPR017930	Myb domain
SuperFamily	SSF46689	6.36E-17	91	145	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.5E-17	92	143	IPR006447	Myb domain, plants
SMART	SM00717	1.8E-10	93	143	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-11	95	140	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-11	96	140	IPR001005	SANT/Myb domain
CDD	cd00167	1.82E-9	96	141	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MLREESLSES VASGGTGAGG EIMLFGVRVK VDPMRKSVSL NNLSQYEQPN ANNNNSSSNS 60 GNNNDSSKVA DECYASADDA VPHNSGSGRE RKRGVPWTEE EHKLFLLGLQ KVGKGDWRGI 120 SRNFVKTRTP TQVASHAQKY FLRRTNLNRR RRRSSLFDIT TDSVSVMPTE DRKNLQDNHI 180 PQVLAPTSLP SIETSKANPF QVETLPVTVR PFVLPAQIEK PIESSIFGQR DQTNNGSSIF 240 WPVHVDHPMS NSSRKADLNL NQSSAMEAAS SSLSLTLSLS LDQNQSASTR HSAFQVMSNF 300 SNGESIISVA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00149	DAP	Transfer from AT1G19000	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009599323.1	1e-117	PREDICTED: transcription factor MYB1R1-like
Swissprot	Q2V9B0	1e-100	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A2I4SCV0	1e-115	A0A2I4SCV0_LYCBA; MYB1R1
STRING	XP_009599323.1	1e-116	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2574	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	4e-56	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]