PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01368g05001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 451aa    MW: 49706.2 Da    PI: 8.9563
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01368g05001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001828323
                              ETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                              C+ C+k F r  nL+ H r H
  Peinf101Scf01368g05001.1  8 CEVCNKGFQREQNLQLHRRGH 28
                              *******************88 PP
2zf-C2H213.60.000282104123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC++C+k +  +s+ k H +t+
  Peinf101Scf01368g05001.1  82 FKCEKCSKKYAVQSDWKAHSKTC 104
                               89*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.59E-7528No hitNo description
Gene3DG3DSA:3.30.160.608.3E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.97628IPR007087Zinc finger, C2H2
SMARTSM003550.025628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551504777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.59E-777102No hitNo description
SMARTSM003559382102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MATNRFLCEV CNKGFQREQN LQLHRRGHNL PWKLKQKTTK EVKRKVYLCP EPTCVHHDPS  60
RALGDLTGIK KHYFRKHGEK KFKCEKCSKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  120
DSFITHRAFC DALAQETARN PPILSTISSH LYGSNNINLG FSKLGSTISD QNHPSSTDIL  180
RLGSTSNTKT NGQFDQNYFN FGTSMPPTNS FFLQESNQDY TANKPIPGLM QLPNLQNNMF  240
NLNFFQTNSA GLDNDGGNSN LSSGLFGDHI STSSIPSLYS SQVESNFNST SSAAPMSATA  300
LLQKAAQMGS TTSNNSNTNT ASLLKAAFGA CGSFSSGIKS DYQPVNFDIV PGSATDGGNH  360
LHDLVDGVNA YGGRESQVYN TATKLNYEQL QPPQKKQLTR DFLGVGEIVR SMSGGFSSQR  420
EKQQHDGIMN MMSSLDSDQS QQSFASAGNF Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-3478139364Zinc finger protein JACKDAW
5b3h_F1e-3478139364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019260438.11e-178PREDICTED: protein indeterminate-domain 5, chloroplastic-like
SwissprotQ8GYC11e-109IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A314LF341e-176A0A314LF34_NICAT; Protein indeterminate-domain 5, chloroplastic
STRINGXP_009786293.11e-176(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.12e-90indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]