PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01365g02024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C3H | ||||||||
Protein Properties | Length: 323aa MW: 36557 Da PI: 8.7334 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 49 | 9.6e-16 | 242 | 267 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+yGd+C+FaHg Peinf101Scf01365g02024.1 242 FKTELCNKWQETGACPYGDSCQFAHG 267 79***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-19 | 236 | 274 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-11 | 238 | 273 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-9 | 241 | 268 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.408 | 241 | 269 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.1E-13 | 242 | 267 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-11 | 275 | 307 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-8 | 275 | 309 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-4 | 279 | 306 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.291 | 279 | 307 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MQRENISTAG YGGELFNFNT SPPSSPSFFK QPNTAFDMTS LYSSTLFPTT PRFSNSQGLI 60 NQHYHEDLME RYNRVLTQLL ETEKKTLALR QENINLKMAN FNLNNRLSLL LKASTEYYAS 120 SVYGPSSGLN LGLDSLVDGL QRMSVNVGEE DTSSEGHTWE DRHQSPTSVM DSGRVEGVDR 180 VVLPKSISVR SNGYLKTVHA SGSKSQNQSK SDKAKAQRVY VKGGTKKEEQ PLELEVYNQG 240 MFKTELCNKW QETGACPYGD SCQFAHGIQE LRPVLRHPRY KTEVCRMVLN GDPCPYGHRC 300 HFRHTLTDQE KLMRSLNTRS LKH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 1e-21 | 242 | 304 | 4 | 66 | Butyrate response factor 2 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00383 | ampDAP | Transfer from AT1G68200 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 5e-91 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009774204.1 | 1e-162 | PREDICTED: zinc finger CCCH domain-containing protein 15 | ||||
Refseq | XP_016470581.1 | 1e-162 | PREDICTED: zinc finger CCCH domain-containing protein 15-like | ||||
TrEMBL | A0A1S4A1Y8 | 1e-161 | A0A1S4A1Y8_TOBAC; zinc finger CCCH domain-containing protein 15-like | ||||
TrEMBL | A0A1U7WHT2 | 1e-161 | A0A1U7WHT2_NICSY; zinc finger CCCH domain-containing protein 15 | ||||
STRING | XP_009774204.1 | 1e-161 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9140 | 22 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 8e-62 | C3H family protein |