PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01349g03025.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 691aa    MW: 78127.4 Da    PI: 8.0031
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01349g03025.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.99.3e-076384223
                              EETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                              +C+ Cg sF+ + +Lk+H+++H
  Peinf101Scf01349g03025.1 63 TCEECGVSFKKPAHLKQHMQSH 84
                              6*******************99 PP
2zf-C2H216.81.9e-0590114123
                               EEET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                               ++C+  dC  s++rk++L+rH+  H
  Peinf101Scf01349g03025.1  90 FVCHvdDCQSSYRRKDHLTRHLLQH 114
                               89*******************9887 PP
3zf-C2H210.80.0015119144123
                               EEET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                               +kCp   C+ +Fs + ++ +H ++ H
  Peinf101Scf01349g03025.1 119 FKCPvdGCKSTFSFQGSMSQHVKKiH 144
                               89*********************999 PP
4zf-C2H220.51.3e-06176200123
                               EEET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                               y+Cp   Cgk+F+  s L++H  +H
  Peinf101Scf01349g03025.1 176 YVCPeaGCGKVFKYASKLRKHEDSH 200
                               9********************9888 PP
5zf-C2H219.42.8e-06296320223
                               EET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                               kC+  dC  +Fs++snL++Hi+  H
  Peinf101Scf01349g03025.1 296 KCEfqDCQHTFSTRSNLVQHIKAaH 320
                               79999****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355331537IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.4E-1060114No hitNo description
PROSITE profilePS5015713.5476289IPR007087Zinc finger, C2H2
SMARTSM003550.00336284IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-86390IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
PROSITE profilePS501579.41190119IPR007087Zinc finger, C2H2
SMARTSM003550.03590114IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-991116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028092114IPR007087Zinc finger, C2H2
SuperFamilySSF576673.8E-5100145No hitNo description
Gene3DG3DSA:3.30.160.606.4E-4117145IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.954119144IPR007087Zinc finger, C2H2
SMARTSM003550.0048119144IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280121144IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-8173202IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.97176205IPR007087Zinc finger, C2H2
SMARTSM003554.3E-4176200IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280178200IPR007087Zinc finger, C2H2
SMARTSM003559.3237262IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280239262IPR007087Zinc finger, C2H2
SMARTSM0035513265286IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.5E-6276317IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.14E-9277333No hitNo description
PROSITE profilePS5015713.214295325IPR007087Zinc finger, C2H2
SMARTSM003550.0037295320IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280297320IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.6E-5319348IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035511326352IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280328352IPR007087Zinc finger, C2H2
PROSITE profilePS513755.042404441IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.437442476IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.32477507IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0011483508IPR002885Pentatricopeptide repeat
PfamPF130414.1E-12507548IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.417508542IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.8E-9510543IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.966545579IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.001547573IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.831611641IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MGEEEEVKKR DIRRYYCEYC GLCRSKKSLI SSHILSHHQD EIERRKDEGN EDANVKEGPK  60
MNTCEECGVS FKKPAHLKQH MQSHSIERPF VCHVDDCQSS YRRKDHLTRH LLQHQGKLFK  120
CPVDGCKSTF SFQGSMSQHV KKIHDPSVSP KXNMSQHVKK IHDPSVSPKV DPPKQYVCPE  180
AGCGKVFKYA SKLRKHEDSH GKSNLKILIF LLICVLKTSN NIKLPCIYAV KLETVEALCL  240
EPGCMKHFTN EKCLKEHINT CHQHIVCEIC GTKQLKKNIK RHLRTHEEGP TSERVKCEFQ  300
DCQHTFSTRS NLVQHIKAAH LGDKPFSCGI PGCGMKFAFK HVRDRHEKSG CHVYTPGDFV  360
EADEQFRSRP RGGRKRKLPV FEDIMRKRIT PPSGTDRVFN QGSEYLSWLL SVESDDELVC  420
SNTAREAVEL FVEMRNEGFE PDERTLVSVL GACGDLGDVN LGKWVEEYVS GKNMELNSFM  480
GSALINMYGK CGDLVSARRI FDGMRKKDVI TWNAMISGYA QNGLSDETVS MFNAMKESGV  540
DPNKITISWN AMISAFAFHG RAQEALSLFE RMTFESSDAC PDDVTFVGVL SACGWLIKAG  600
IMSSSFGLVP KVEHFSCIVY LLSRAGCVYE SWEFTEKMPQ KPDGILLDAL VGAYRKLKNI  660
DVGEQVMQLL LVMEPSNSGN YIISSKIYAD L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D3e-2941666625330PLS9-PPR
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368376RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453639.10.0PREDICTED: transcription factor IIIA-like isoform X2
SwissprotQ84MZ41e-135TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A1S3YMZ90.0A0A1S3YMZ9_TOBAC; transcription factor IIIA-like isoform X2
STRINGXP_009592258.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-129transcription factor IIIA