PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01332g00001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 567aa    MW: 65419.9 Da    PI: 7.994
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01332g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.45.8e-07338379347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT+eE e   + ++++G++ Wk  a ++g  + + ++k+ w+ +
  Peinf101Scf01332g00001.1 338 KWTEEEYEMVRKFHREHGPK-WKVLADELG--KHRFHVKDTWRRL 379
                               8*****************99.********9..6788899888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.021262333IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-5265352IPR009057Homeodomain-like
SMARTSM007170.55335382IPR001005SANT/Myb domain
SuperFamilySSF466892.47E-8337397IPR009057Homeodomain-like
PROSITE profilePS500906.934338380IPR017877Myb-like domain
PfamPF139219.3E-10339397No hitNo description
Gene3DG3DSA:1.10.10.602.6E-7353391IPR009057Homeodomain-like
PROSITE profilePS500907.933381449IPR017877Myb-like domain
SuperFamilySSF466894.31E-5384449IPR009057Homeodomain-like
SMARTSM007170.021385451IPR001005SANT/Myb domain
CDDcd001670.0081389446No hitNo description
Gene3DG3DSA:1.10.10.608.0E-9392449IPR009057Homeodomain-like
SuperFamilySSF466895.8E-5429504IPR009057Homeodomain-like
PROSITE profilePS500907.131451504IPR017877Myb-like domain
SMARTSM0071789455506IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MVLGDEKEGM LRKQEKKSKK SNKKAAINGL ALTTADVKAI KGDFSFDEEK LAVVETLIQR  60
DKEEMETKAA GEIDQCGVKR KKKRGGNHLH KSNKDSDEDA AEGVVEKKRK LKKSCKDEQQ  120
TMQYAPLDTE KRAPASASET WDNDKVVETF GVVSSENAVD EIRRKNKSKK SIKTSATSGE  180
VTNTEVNQGA VFPSIEEREE GSRTENGNIR KRKKVKLGQR PEDPIHENSE KRVRFSGHVQ  240
VFPSPNDPSD EKHEIEEETL LRGKRFSKLE DEIIKNAVHK YIEIHNMGEE GLQKILNSRS  300
HPEIKGCWKE IGSTIPYRPY ISVYYRAHVL FQRCETRKWT EEEYEMVRKF HREHGPKWKV  360
LADELGKHRF HVKDTWRRLK LSNQKKGQWT QEEYQTLFDL VNTDLRLKLS EDKKSKYGML  420
RDNIPWSAIS DKLSTRTAPS CCLKWYDQLT SPMVAKGEWA DADDYHLIDA LFVLDASCVE  480
DVDWDNLLDH RPGEICRKRW NQMVLHIDQC GNRSFAEQIE VLAKRYRPDL AEESEATVAA  540
KGLTVENLKS KLDELHLDPG IEKNWEK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209213RKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760244.10.0PREDICTED: transcription termination factor 1-like
RefseqXP_016471261.10.0PREDICTED: transcription termination factor 1-like
RefseqXP_016471262.10.0PREDICTED: transcription termination factor 1-like
TrEMBLA0A1S4A3L00.0A0A1S4A3L0_TOBAC; transcription termination factor 1-like
TrEMBLA0A1U7VD640.0A0A1U7VD64_NICSY; transcription termination factor 1-like
STRINGXP_009760244.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10291429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-127MYB_related family protein