PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01317g00011.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

GRAS

Protein Properties

Length: 319aa MW: 36732.5 Da PI: 4.7714

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01317g00011.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	188.4	4.8e-58	66	312	130	374
GRAS 130 qaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledleleeLrvkpgEalaVnlvlqlhrl 213 +aLa+R++++p+l++T+v +++ + ++e+++r++kfA+ +gvpfefnv+ ++l++l+ e+L+v+ +Ea+aVn++ +l ++ Peinf101Scf01317g00011.1 66 EALATRNDETPHLKLTVVITENTLVNSVMKEVAQRMEKFARLMGVPFEFNVIgGLNHLKELTKENLNVQADEAVAVNCIGSLRKV 150 69****************9999***********************97788************************9 PP GRAS 214 ldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 +e+ r ev+++++sl+Pkvv++ve+++d ++++F++ f e+l++y+ f++l++++p++s+er ++Ere +r+iv Peinf101Scf01317g00011.1 151 A-----VEE-RGEVIRMLQSLNPKVVTIVEHDVDFssTRNDFVKCFEECLRFYTLYFEMLDENFPPTSNERLMIERE-CSRSIVR 228 8.....444.89****************998545679********************************.89* PP GRAS 297 vvacegae...rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.....eesgslvlgWkdrpLvsvSaW 373 v+ac + er+e+ +W++rl+e GF+p pl+++a +++k+ll+++k g+++ ++s ++l+W+++p+v++SaW Peinf101Scf01317g00011.1 229 VLACDDQVdegDCERRERGIQWSQRLQE-GFSPFPLNDDALDDVKSLLKRYK-AGWSLVlpqedQDSPGIYLTWREEPVVWASAW 311 8765224679999999*975.*******************.666665556556688999************ PP GRAS 374 r 374 + Peinf101Scf01317g00011.1 312 K 312 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	23.727	1	288	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-55	66	312	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MQNPNQQQPH DQNSSRSQSP DYGEPVSDAK WASRLLRECA TAISEKNSTK IHHLLWMLNE 60 LASPYEALAT RNDETPHLKL TVVITENTLV NSVMKEVAQR MEKFARLMGV PFEFNVIGGL 120 NHLKELTKEN LNVQADEAVA VNCIGSLRKV AVEERGEVIR MLQSLNPKVV TIVEHDVDFS 180 STRNDFVKCF EECLRFYTLY FEMLDENFPP TSNERLMIER ECSRSIVRVL ACDDQVDEGD 240 CERRERGIQW SQRLQEGFSP FPLNDDALDD VKSLLKRYKA GWSLVLPQED QDSPGIYLTW 300 REEPVVWASA WKPREKSIE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_B	7e-72	66	313	164	420	Protein SHORT-ROOT
5b3h_E	7e-72	66	313	164	420	Protein SHORT-ROOT
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019236790.1	1e-160	PREDICTED: protein SHORT-ROOT-like
TrEMBL	A0A1J6KMC5	1e-159	A0A1J6KMC5_NICAT; Protein short-root
STRING	XP_009785856.1	1e-159	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2031	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37650.1	2e-72	GRAS family protein