PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01310g01017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | AP2 | ||||||||
Protein Properties | Length: 484aa MW: 53803.4 Da PI: 6.9923 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6.1e-17 | 164 | 213 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Peinf101Scf01310g01017.1 164 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 213 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.6E-9 | 164 | 213 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.89E-16 | 164 | 222 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-17 | 165 | 222 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.47E-11 | 165 | 223 | No hit | No description |
PROSITE profile | PS51032 | 17.794 | 165 | 221 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.0E-33 | 165 | 227 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.31E-13 | 256 | 301 | No hit | No description |
SuperFamily | SSF54171 | 2.09E-6 | 256 | 300 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.7E-13 | 257 | 305 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MMLDLNLSAI YDEKVGKITV ADESGTSNSS LRNAEASSSA GDDDTCSTRA AGDLFAFNFD 60 ILKVGGAETS RSCCNNDDEE VYDENHVRMA RPDVVTQQFF PVDIAESNRA HHTSRRPDWV 120 DLSYDPPNTV GLREVGIVHP QQQQYQQQQQ PVKKSRRGPR SRSSQYRGVT FYRRTGRWES 180 HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF NLSDYDEDMK QMKNLSKEEF 240 VHMLRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK AYDKAAIKCN GREAVTNFEP 300 STYEGETISD PRSEGSQQDL DLNLGISTSS AKEIERSGSF QYHPYDMQDA TKLQMDKSGP 360 AIVSSSHFKA QSMTSEQAHL WNGVYSNFFP SYEERASGKR VEVGSSQGPP SWIMQMHGQV 420 GTTPMSMFTA AASSGFSSPA TIASASPISG PNPNIHNLSF ATYSTASTNT SQYFYQIRPP 480 LPPP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009784820.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2 | ||||
Refseq | XP_016501409.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2 | ||||
Swissprot | Q9SK03 | 1e-108 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A220QTH6 | 0.0 | A0A220QTH6_PETAX; AP2-like ethylene-responsive transcription factor | ||||
STRING | XP_009784819.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.1 | 1e-107 | related to AP2.7 |