PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01289g06005.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB
Protein Properties Length: 220aa    MW: 24743.8 Da    PI: 9.9922
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01289g06005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.9e-184085147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              +g+W++eEd++l + v+++G ++W++I++++  gR++k+c++rw + 
  Peinf101Scf01289g06005.1 40 KGPWSAEEDKILTRFVERYGAKNWSLISKYIK-GRSGKSCRLRWCNQ 85
                              79*****************************9.***********985 PP
2Myb_DNA-binding49.69.2e-1694136347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               ++++ Ed+ ++ a++++G++ W+tIar +  gRt++ +k++w++ 
  Peinf101Scf01289g06005.1  94 PFSPAEDDTILAAHAKYGNR-WATIARLLH-GRTDNAVKNYWNST 136
                               79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.2173590IPR017930Myb domain
SuperFamilySSF466892.84E-3137133IPR009057Homeodomain-like
SMARTSM007173.1E-163988IPR001005SANT/Myb domain
PfamPF002499.3E-184085IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-244193IPR009057Homeodomain-like
CDDcd001671.06E-144284No hitNo description
SMARTSM007175.9E-1491139IPR001005SANT/Myb domain
PROSITE profilePS5129419.11692141IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-2394140IPR009057Homeodomain-like
CDDcd001672.52E-1094137No hitNo description
PfamPF002492.2E-1394136IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MEGSSSTCSS SETSSSESSL SAGTTKTPRD GNNKKPERIK GPWSAEEDKI LTRFVERYGA  60
KNWSLISKYI KGRSGKSCRL RWCNQLSPQV EHRPFSPAED DTILAAHAKY GNRWATIARL  120
LHGRTDNAVK NYWNSTLKRR QQIRNNVSVD ESPIIITRND IIVNANNWAM TTLSLAPPGM  180
GGDRLLEKSF PVEFWDVMED VIAKQVREYV ASSFTSPGFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-39361403107B-MYB
1h88_C1e-383614054158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-383614054158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620130.12e-91PREDICTED: transcription factor MYB44-like
RefseqXP_016433235.12e-91PREDICTED: transcription factor MYB44-like
TrEMBLA0A1S3WZU34e-90A0A1S3WZU3_TOBAC; transcription factor MYB44-like
STRINGXP_009620130.17e-91(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79502131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.15e-57myb domain protein 77