PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01278g08004.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HRT-like
Protein Properties Length: 501aa    MW: 55803.9 Da    PI: 10.1578
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01278g08004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like52.58.1e-17254284131
                  HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                               iCGv+l++GsvC r+P+ g+KRC+eHKGm++
  Peinf101Scf01278g08004.1 254 ICGVALGHGSVCIRPPIMGNKRCAEHKGMKV 284
                               8****************************97 PP
2HRT-like50.82.8e-16317347131
                  HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                               iCG+il+ G +C r+P kg+KRC eHKG+Ri
  Peinf101Scf01278g08004.1 317 ICGFILDSGAPCARKPFKGNKRCLEHKGRRI 347
                               8*****************************7 PP
3HRT-like53.24.9e-17399429131
                  HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                               iCGv+l+ G  C+rqP+ gRKRCeeHKGmR+
  Peinf101Scf01278g08004.1 399 ICGVHLNGGALCTRQPAVGRKRCEEHKGMRV 429
                               8*****************************7 PP
4HRT-like42.41.2e-13471500130
                  HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                               +CG++l++Gs+C+r+P   +KRC++HKGm+
  Peinf101Scf01278g08004.1 471 TCGATLRNGSCCRRKPSGRNKRCWQHKGMK 500
                               7****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd007190.0061184121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MGATDGCVSV RLKREECKRT KHDSAFCGWK ILIGANDWEE YLAGKEGAEK YRTQNLPNCA  60
SCPGVYELGI AISRREASRL DSDYIIPVYV GKSDNVRTRL QRYGREGAHL ENGQEKAGLF  120
KEAFSRGLSI VYRWAPMNHN KAAEETEAQL LDKFDYAWNK GSNGVRRQDD VLRKLDGISR  180
ATRLPAIIRK LQLSLEKQKG IRIKACEPLL LENGSDFHDR FERTSFLPRI FKLGRSQPRL  240
VSLSYGANGG PHTICGVALG HGSVCIRPPI MGNKRCAEHK GMKVNCVNSK LKAEGTSFVI  300
NESTRPCSSR DEENALICGF ILDSGAPCAR KPFKGNKRCL EHKGRRIRAF IPQPVTDKGG  360
LEYRTYTSND CQQMLSNRVD LQRPEDFSGS LILKNQNVIC GVHLNGGALC TRQPAVGRKR  420
CEEHKGMRVK EPIPKQLGAE VPGVLASPTA KTRSGKKHWN IDSPSVNHSP TCGATLRNGS  480
CCRRKPSGRN KRCWQHKGMK S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580607.10.0PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBLA0A1U8HAY80.0A0A1U8HAY8_CAPAN; protein EFFECTOR OF TRANSCRIPTION 2-like
STRINGXP_009779864.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77412330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-100effector of transcription2