PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01254g10016.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 469aa    MW: 52380.6 Da    PI: 10.3916
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01254g10016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.3e-071246136
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36
                              + +W t+E+++l  av ++G+++W+ +a+++   Rt
  Peinf101Scf01254g10016.1 12 KRKWGTWEELILGGAVLRHGTNNWNVVASELR-SRT 46
                              569****************************9.999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.35E-51146IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-41146IPR009057Homeodomain-like
PfamPF002491.7E-51247IPR001005SANT/Myb domain
CDDcd001670.006011446No hitNo description
SuperFamilySSF473702.49E-16227338IPR001487Bromodomain
Gene3DG3DSA:1.20.920.108.8E-16233341IPR001487Bromodomain
SMARTSM002978.4E-12237341IPR001487Bromodomain
PfamPF004393.2E-10246326IPR001487Bromodomain
PROSITE profilePS5001410.153252322IPR001487Bromodomain
CDDcd043692.50E-12259336No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MGAEARVVGP RKRKWGTWEE LILGGAVLRH GTNNWNVVAS ELRSRTIHPY YFTSKLRKRR  60
VEELKRELEK SESSIGSLLS KIESLKAERE QSAQIDYGSS RTQSPAALVK SEYMESNGKN  120
GISAGSFTLN TTPEFESPTI ASVKQIDPKL ECCEPCEPEE VPSISKQLET AHGNGGALRK  180
RRGKRKRKDV ILDGKEWSIG ESDNACSISG ISSSQCKETS ASCERHSTIE DSKRGSSRMM  240
NDDLMAIFNS IIQSEAAMMF SHRLDSQKRA RYKEMIRQHM DIETVRSRLV SCSIKSAGEL  300
FRDLLLLATN ALVFYSKRTK AYKSAEVLRD IVTKAYWSHY KSPYNKATSS LVTFSTIGSL  360
PVKPRSARSR PSKDKLQAKS SDNASTINGT LGGDDHKLSD ADSKVPLQSL LAGKKCFKRR  420
GKFKHGLVDG SVSGITKVPV KEDIRPKTQV KEDHQSEMVA KERKRARKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180188RRGKRKRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019241743.10.0PREDICTED: uncharacterized protein LOC109221746 isoform X1
TrEMBLA0A1S4CM590.0A0A1S4CM59_TOBAC; bromodomain-containing protein 8-like isoform X4
STRINGXP_009595879.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55341924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.11e-12DNA-binding bromodomain-containing protein