PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01241g15008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 331aa MW: 37179.2 Da PI: 4.6233 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60 | 3.7e-19 | 100 | 153 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ +++ +LAk lgL+ rq+ +WFqNrRa++k Peinf101Scf01241g15008.1 100 KKRRLTAEQVQFLEKSFEVENKLEPDRKVQLAKDLGLQPRQIAIWFQNRRARWK 153 56789************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.91E-19 | 89 | 156 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.427 | 95 | 155 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.5E-19 | 98 | 159 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.60E-17 | 100 | 156 | No hit | No description |
Pfam | PF00046 | 1.9E-16 | 100 | 153 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-20 | 101 | 162 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 126 | 135 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 130 | 153 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 135 | 151 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.1E-12 | 155 | 196 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MAAGRGLFYS DAAGGAGFNI TLFQKQRILS SSSSSCVTTD AVGSLLVPGC SPPFLASGSM 60 VSFGGVNGGK KSDSTFFQSF DQEENEIDQD LEEYLHQPEK KRRLTAEQVQ FLEKSFEVEN 120 KLEPDRKVQL AKDLGLQPRQ IAIWFQNRRA RWKTKSLETD YEALRNKYDK MKADYSNVLR 180 EKEDLRAEVV RLTNKLLLKD KEKGELDTSD VKKPSDVSPK ENMVVPTLED EVSKVSASVL 240 KQQDDFNSAK SDVLNSESLH YTDGVQSSIL EQGDSSNVFE HDQSDLSQDE EENFSKNLLA 300 KVEHDHCPMT SSNLSFFGFS VEDQGFGFWS F |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009604802.1 | 1e-168 | PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1 | ||||
TrEMBL | A0A314KNV7 | 1e-146 | A0A314KNV7_NICAT; Homeobox-leucine zipper protein hat5 | ||||
STRING | XP_009604802.1 | 1e-168 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA825 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 5e-44 | homeobox 1 |