PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01192g05046.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 256aa    MW: 28935.8 Da    PI: 9.2464
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01192g05046.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003398120223
                               EETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                               +C+ C+++++++ +L  H +  H
  Peinf101Scf01192g05046.1  98 SCSVCSRVYPTSRLLSIHVSEaH 120
                               6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003553.27095IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807295IPR007087Zinc finger, C2H2
SMARTSM003555.497120IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028099120IPR007087Zinc finger, C2H2
SMARTSM003550.31135160IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280137160IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MAMEIETQTK TQLGFPFWSP IRRRFGPDDP FFAAGNIQRE LLAKQVALDL TEEEEKQLIH  60
NIPDEEISNV FCPIVGCRAR MRSLDDFEDH YAARHTASCS VCSRVYPTSR LLSIHVSEAH  120
DSFFQAKVAH GFPMYECLVE GCGIKLKSYK SRQQHLVDKH KFPATYEFFK RARPSKKQRQ  180
KIQHKHASVK TQETSSAMQV EEETIDDLVS AVSKLTTSDS PSAISFGRSR ARGLSFVPRA  240
VNQQRGPVTS TGGTKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-111HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016470963.11e-171PREDICTED: zinc finger protein 511-like
TrEMBLA0A1S4A2V91e-170A0A1S4A2V9_TOBAC; zinc finger protein 511-like
STRINGXP_009620329.11e-170(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102112022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-114zinc ion binding;nucleic acid binding;zinc ion binding