PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01192g04052.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 694aa    MW: 76844.6 Da    PI: 5.2847
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01192g04052.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4393.4e-1343296931374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalkl 83 
                               lv+lLl+cAeavs++d  la+++L +l+  ++p gd+mqR+a++fteAL+arla    ++   +al+p +  + ns e l+++++
  Peinf101Scf01192g04052.1 329 LVHLLLACAEAVSKEDYMLARRYLHHLNRVVTPLGDSMQRVASCFTEALSARLAAtlATKPSTSALKPFNPFPPNSLEILKIYQI 413
                               68****************************************************955455566677777777788********** PP

                      GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168
                               +++++P++kf+h+taNqaI ea+e eervHiiD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s e+++etg+ L+++
  Peinf101Scf01192g04052.1 414 LYQACPYVKFAHFTANQAIFEAFEAEERVHIIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----SPEAVRETGRCLTEL 494
                               ******************************************************************....9************** PP

                      GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                               A++l+vpfef++ v ++ledl++++++ + gEalaVn+v +lhr++       +++ ++L ++++  P++v++veqea+hn++ F
  Peinf101Scf01192g04052.1 495 AHSLHVPFEFHP-VGEQLEDLKPHMFNRRVGEALAVNSVNRLHRVP------VNCIGNLLAMIRDQAPNIVTIVEQEASHNGPYF 572
                               ************.7*******************************9......444557*************************** PP

                      GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                               l rfleal+yysa+fdsl+a++p++s++r+k+E+ ++++ei+n+v+ceg+er+ rhe+lekWr+ +e  GFk v+ls +a++q k
  Peinf101Scf01192g04052.1 573 LGRFLEALHYYSAIFDSLDATFPADSSQRAKLEQYIFAPEIMNIVSCEGQERNVRHERLEKWRRLMEGKGFKGVALSANAVTQSK 657
                               ************************************************************************************* PP

                      GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                ll  ++ dgy++ e++g+l+lgW+dr+++++SaWr
  Peinf101Scf01192g04052.1 658 ILLGLYSCDGYKLTEDDGCLLLGWQDRAILAASAWR 693
                               ***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.157303673IPR005202Transcription factor GRAS
PfamPF035141.2E-131329693IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MGSLNNEVGS IKCEVGSLKS ENSFTKLPSE ESLASESKKV TPVSSDFELN CGSLAPTSLS  60
FPSMKFEDDI EIQSPDNSIW ESFFADHLEG DFMISSPIRN LPSPQPASSF SSSHNNSNNN  120
NNYNIYTHRQ GIHGQDMMMC SPPRSPLGLY NHPSHKGKGL SPLQKVFNSP NNQFMQIESF  180
NLPALESFLD DDYDKEEDLA SSYSTLKVSG TGVAGSSSES FDALSVVPDD LLECLALPSS  240
LSNTSGGFME SLLSDTTAVQ VINPDDEIFR TGSIAPLSQQ LHQERQQEKQ QKQRPVTHAR  300
PQQQQIINHN LLVPPAAAPD QEQDSGLQLV HLLLACAEAV SKEDYMLARR YLHHLNRVVT  360
PLGDSMQRVA SCFTEALSAR LAATLATKPS TSALKPFNPF PPNSLEILKI YQILYQACPY  420
VKFAHFTANQ AIFEAFEAEE RVHIIDLDIL QGYQWPAFMQ ALAARPGGAP FLRITGVGPS  480
PEAVRETGRC LTELAHSLHV PFEFHPVGEQ LEDLKPHMFN RRVGEALAVN SVNRLHRVPV  540
NCIGNLLAMI RDQAPNIVTI VEQEASHNGP YFLGRFLEAL HYYSAIFDSL DATFPADSSQ  600
RAKLEQYIFA PEIMNIVSCE GQERNVRHER LEKWRRLMEG KGFKGVALSA NAVTQSKILL  660
GLYSCDGYKL TEDDGCLLLG WQDRAILAAS AWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-983146922377Protein SCARECROW
5b3h_D6e-983146922377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6122640.0KR612264.1 Petunia axillaris transcription factor (ATA/RAM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803754.10.0PREDICTED: DELLA protein RGL2-like
RefseqXP_016497576.10.0PREDICTED: DELLA protein RGL2-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A0M4FMK20.0A0A0M4FMK2_PETAX; Transcription factor
STRINGXP_009803754.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125661922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-96RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]