PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01155g04019.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 389aa    MW: 44511 Da    PI: 9.1888
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01155g04019.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188.1e-06112135123
                               EEETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                               y+C  Cg++F +++ L++H +  H
  Peinf101Scf01155g04019.1 112 YVCRVCGRRFYTNEKLVNHFKQiH 135
                               9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.5E-5108137No hitNo description
SMARTSM003550.0044112135IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.801112140IPR007087Zinc finger, C2H2
PROSITE patternPS000280114135IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.40.50.10103.3E-8115165IPR029060PIN domain-like
CDDcd061678.65E-16129264No hitNo description
PfamPF019364.6E-9184265IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10103.3E-8197269IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MMKCVKVSTF IHAIHSYARF CHFESKPHLV KGTSVGIFWD LDNKPPKSFP PFDAATKLKK  60
AVMEFGFLKF TVAYANRHAF SYVPPLVREQ RKERKALNSL ESSGIVKVED PYVCRVCGRR  120
FYTNEKLVNH FKQIHERENV KRLNQIDSAR GKMRVKLVSK YAMKMDKYKY AVRDVLTPKV  180
GYGLADELKR AGFWVRTVSD KPQAADVALR NHLVDVMDKR MVDCVVLVSD DSDFVEVLKE  240
ARLRCLKTVV VGDSNDGALK RTADAAFSWQ EIMMGKAKKE AGSVVGRWKD RDVLKRLEWT  300
YDPEKEKKLY YSEVESDDSD ELFSGEDENK DIDVSVSEEG ARAWWKLDSP SGTFDLCGEN  360
LERAGNHGST WKGPKFLRMS VQLEAEGYS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165745.10.0PREDICTED: uncharacterized protein LOC102600262 isoform X1
RefseqXP_015165746.10.0PREDICTED: uncharacterized protein LOC102600262 isoform X1
TrEMBLM0ZKC80.0M0ZKC8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000026020.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA121251920
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-125C2H2 family protein