PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01142g03003.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

M-type_MADS

Protein Properties

Length: 307aa MW: 35311.6 Da PI: 9.3926

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01142g03003.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	37.5	3.1e-12	4	45	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i+ ++ r+vtf kR++ + KK +E +LC+++ ++i++++++ Peinf101Scf01142g03003.1 4 ISKERARNVTFKKRKESLKKKLHEFTTLCNVNGCMIMYGPKQ 45 899999*********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.2E-4	1	53	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	11.83	1	44	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.09E-12	1	63	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-13	4	45	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MELISKERAR NVTFKKRKES LKKKLHEFTT LCNVNGCMIM YGPKQSNGSS SEPEIWTNNS 60 TNTTKSLQEE EVQNLIDGYK KSIMVSRSTK TFGLFDYFID RNKNVEKELI KLRKMNMEKK 120 YPGWLKFLDH LSEIKLREVI SILDDKVEKV KFRIDLLKGN MNIASEYFVE AAAEGMKLSQ 180 LTNYNDNISP LMVQGGSALG GFMSNHHEQA IYPYCNSIVN HQEQVIYPYW QNNGAASSSG 240 SNNIRGALMK YETMMCNNQM SYSPYVAPTI RQSAPYMMIP SDFPPMDLPV RENERDVKGK 300 LLPYLKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019255836.1	1e-133	PREDICTED: agamous-like MADS-box protein AGL80
TrEMBL	A0A1J6IR27	1e-132	A0A1J6IR27_NICAT; Agamous-like mads-box protein agl80
STRING	XP_009774508.1	1e-132	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2457	22	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	2e-12	AGAMOUS-like 82