PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01063g05008.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

WOX

Protein Properties

Length: 311aa MW: 35504.9 Da PI: 6.9616

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01063g05008.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.8	5.1e-20	45	106	2	57
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t++q+++L++l+++ r p+ae+++++++kl +++ ++V++WFqN++a+e++ Peinf101Scf01063g05008.1 45 STRWTPTTDQIRILKDLYYNngVRSPTAEQIQRISAKLrqygKIEGKNVFYWFQNHKARERQ 106 58***************8678***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-7	28	106	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.2E-11	31	108	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.527	41	107	IPR001356	Homeobox domain
SMART	SM00389	4.9E-6	43	111	IPR001356	Homeobox domain
Pfam	PF00046	2.4E-17	46	106	IPR001356	Homeobox domain
CDD	cd00086	7.34E-7	46	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010492	Biological Process	maintenance of shoot apical meristem identity
GO:0080166	Biological Process	stomium development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
METAQHQQNN QQHYLHQHLS IGQGTNIEDG SNKNNSSSFM CRQSSTRWTP TTDQIRILKD 60 LYYNNGVRSP TAEQIQRISA KLRQYGKIEG KNVFYWFQNH KARERQKKRL IAAATTDNTN 120 LPMQMQLQRG VWRSSADDPI HHKYTNPGAH CPSASSHGVL AVGQNGNHGY GALAMEKSFR 180 WLSKQDCSIS PGSSMSHHHQ NFAWAGVDPY SSTTTYPFLE KTKHFENETL EADEEQQEED 240 QENYYYQRTT SAIETLPLFP MHEENISSFC NLKHQESSGG FYTEWYRADD NLAAARASLE 300 LSLNSFIGNS S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269\|PubMed:12208843}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00265	DAP	Transfer from AT2G17950	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF481951	0.0	AF481951.1 Petunia x hybrida wuschel protein (WUS) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009792214.1	1e-159	PREDICTED: protein WUSCHEL
Refseq	XP_016474994.1	1e-159	PREDICTED: protein WUSCHEL-like
Refseq	XP_019251500.1	1e-159	PREDICTED: protein WUSCHEL
Swissprot	Q8LL11	0.0	WUS_PETHY; Protein WUSCHEL
TrEMBL	A0A1J6I7G3	1e-158	A0A1J6I7G3_NICAT; Protein wuschel
TrEMBL	A0A1S4AEE8	1e-158	A0A1S4AEE8_TOBAC; WUS
TrEMBL	A0A1U7XZ16	1e-158	A0A1U7XZ16_NICSY; protein WUSCHEL
STRING	XP_009792214.1	1e-159	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7604	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	4e-43	WOX family protein

Publications ? help Back to Top
Stuurman J,Jäggi F,Kuhlemeier C Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells. Genes Dev., 2002. 16(17): p. 2213-8 [PMID:12208843]