PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01057g02002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | NAC | ||||||||
Protein Properties | Length: 333aa MW: 37298.9 Da PI: 9.1216 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.4 | 3.8e-55 | 10 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeel+++yL +k++++++++ ++i +vd++k+ePwdLp k+k + kewyfFs rd+ky+tg r+nrat++gyWk+ Peinf101Scf01057g02002.1 10 LPPGFRFHPTDEELITYYLVNKISDSTFTA-RAIGDVDLNKSEPWDLPGKAKMGVKEWYFFSLRDRKYPTGVRTNRATNTGYWKT 93 79*************************999.89***************999999******************************* PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkdke++++ ++elvg+kktLvfykgrap+gekt+Wvmheyr+ Peinf101Scf01057g02002.1 94 TGKDKEIFNSsTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRI 137 ********9878889***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-62 | 8 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.881 | 10 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.8E-29 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MEGEVKEETL PPGFRFHPTD EELITYYLVN KISDSTFTAR AIGDVDLNKS EPWDLPGKAK 60 MGVKEWYFFS LRDRKYPTGV RTNRATNTGY WKTTGKDKEI FNSSTSELVG MKKTLVFYKG 120 RAPRGEKTNW VMHEYRIHSK SSYRTHKQDE WVVCRVFQKS AGGKKYPSNN SRAVNVNPYT 180 LEIIPSTMSS QMMQADHGFQ LAMGRGYMNH AEIQEFNRVF RGGSSSSMSF PIQSQMNYNL 240 GGGNSGGGGN CFTISGLNLN LGGGATTSQP ILRPMTSPPP QPTQVMNQQD MSTNVLMTSE 300 TAGYGADVSN GNAMNRFMAM ENCADLENYW PTY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-55 | 9 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-55 | 9 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-55 | 9 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-55 | 9 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-55 | 9 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-55 | 9 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-55 | 9 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-55 | 9 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-55 | 9 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-55 | 9 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-55 | 9 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-55 | 9 | 165 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-55 | 9 | 165 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-55 | 9 | 165 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00277 | DAP | Transfer from AT2G24430 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009622905.1 | 0.0 | PREDICTED: NAC domain-containing protein 92-like | ||||
Swissprot | Q9FLJ2 | 3e-80 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A1S3Z3T4 | 0.0 | A0A1S3Z3T4_TOBAC; NAC domain-containing protein 92-like | ||||
STRING | XP_009622905.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 1e-105 | NAC domain containing protein 38 |
Publications ? help Back to Top | |||
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