PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01050g07020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ARR-B | ||||||||
Protein Properties | Length: 662aa MW: 72800.9 Da PI: 6.1345 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.6 | 3.1e-29 | 203 | 256 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl Peinf101Scf01050g07020.1 203 KPRVVWSVELHQQFVQAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 256 79*******************.********************************8 PP | |||||||
2 | Response_reg | 66.6 | 1.1e-22 | 27 | 131 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgee 83 vl+vdD+p+ +++l+++l+ + +++ +e al ll+e++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a + + Peinf101Scf01050g07020.1 27 VLVVDDDPTCLRILEKMLR-----NFTTCNRAEIALSLLRENKngFDVVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDGK 105 89*****************.....447788888888888777778**********************6644.8************ PP HHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 84 edalealkaGakdflsKpfdpeelvk 109 + + + + Ga d+l Kp+ +e+l + Peinf101Scf01050g07020.1 106 DVVMKGVTHGACDYLIKPVRMEALKN 131 *********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 5.0E-176 | 7 | 652 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 2.42E-32 | 24 | 143 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.8E-38 | 24 | 144 | No hit | No description |
SMART | SM00448 | 6.0E-26 | 25 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 34.191 | 26 | 137 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.9E-20 | 27 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 7.99E-25 | 28 | 136 | No hit | No description |
PROSITE profile | PS51294 | 11.351 | 200 | 259 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.18E-20 | 200 | 260 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-30 | 202 | 261 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-25 | 203 | 256 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-8 | 205 | 255 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 662 aa Download sequence Send to blast |
MNLGASSSVS WKSNDKVSDQ FPAGLRVLVV DDDPTCLRIL EKMLRNFTTC NRAEIALSLL 60 RENKNGFDVV ISDVHMPDMD GFKLLEHVGL EMDLPVIMMS ADDGKDVVMK GVTHGACDYL 120 IKPVRMEALK NIWQHVVRKK KHEWKDKDCD QSASIEDGDR QQKPPEDVDY SSSANDGNWK 180 SSKKRKEEED EADERDETST LKKPRVVWSV ELHQQFVQAV NQLGIDKAVP KKILELMNVP 240 GLTRENVASH LQKYRLYLRR LQHPNGLNNS FMGHPDAAYG TMSSFNGLEL QALAASGQLP 300 AQSLATLQAA ALGRSATKSA ISMPLVDQRN LFSFENPKLR FSEGQQLNNS NKQINLLHGI 360 PTTMEPKQLA DLHQSSQSFV AMNMQGNSRV QQNSSLLMQM SQQPSRAQML NETNNGSQVP 420 RPPLSMSQPL SSNGIPGAVL SRSGIVDNVR GTVYSPVSQA SSMVDFSLNQ NAEFQNNSFP 480 LVSSNSGMST LTSKGMLQEE VNSDIKGSRG FPPGYNIFGE LHPQKSQDWG LPNVGSTFDA 540 SHHSSMPGTL SVSPSMLVQQ GISSTKKSGQ NGNSPISKVV FSSREESGNV NPMGGLQINT 600 LGGNLLPVKS EQFHDASYQN TFFPEQFGQD DLMSALLKQQ ESVGPVETEF GFDGYPLDNL 660 PV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 6e-21 | 203 | 259 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF412542 | 0.0 | JF412542.1 Nicotiana tabacum RRB2 type-b response regulator mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009615647.1 | 0.0 | PREDICTED: two-component response regulator ARR2-like | ||||
Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
TrEMBL | A0A0A1WC27 | 0.0 | A0A0A1WC27_NICAT; Two-component response regulator | ||||
STRING | XP_009615647.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3191 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16857.2 | 1e-154 | response regulator 1 |