PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01050g04008.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 374aa    MW: 42147.1 Da    PI: 5.839
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01050g04008.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72.1e-161490148
                              TSSS-HHHHHHHHHHHHHTTTT..............................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..............................tWktIartmgkgRtlkqcksrwqkyl 48
                              rgrWT+eEdell+++++  G g                              +W++ a++++ gRt++++k++w+++l
  Peinf101Scf01050g04008.1 14 RGRWTAEEDELLLKYIQANGEGswrslpknaddyyrgltqyafiyhfqivcyRWSLMASYLP-GRTDNEIKNYWNSHL 90
                              8*************************************************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-20594IPR009057Homeodomain-like
PROSITE profilePS5129414.12994IPR017930Myb domain
SuperFamilySSF466891.05E-141186IPR009057Homeodomain-like
SMARTSM007173.4E-151392IPR001005SANT/Myb domain
PfamPF002494.1E-71445IPR001005SANT/Myb domain
CDDcd001675.11E-91690No hitNo description
PfamPF002499.1E-66690IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MVRAPCCEKV GIKRGRWTAE EDELLLKYIQ ANGEGSWRSL PKNADDYYRG LTQYAFIYHF  60
QIVCYRWSLM ASYLPGRTDN EIKNYWNSHL RRRIYTFRMK KKPIKTVAEV PNKTIVADGL  120
NCESLKKCGR VSRSKAKKYN NSITTTTTAY ISTLKPKSSC VGAGGGATCS EGDSIVDTGI  180
GLDIRQHDED HAGSAIGKPR NEETEGTNQK HINATPKKQE VCDGRLSFEE QGQQVLDEHI  240
LIGPHEKNVG DETVHLQQPN YCLHDFGNQV SLSGVLEVDE ESHENWWSTM NSDNFLEDEL  300
WVDQCSSLDL EFGSIEECDD IDFNRDSAYN SYIFCSTAAA SGKRKIDLKA LKTKGLELPD  360
PSKVFAGIVW DAFN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT9629510.0KT962951.1 Petunia integrifolia subsp. inflata R2R3-MYB transcription factor (MYB-FL) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019241097.11e-82PREDICTED: transcription repressor MYB4-like isoform X2
TrEMBLA0A0S3CVB60.0A0A0S3CVB6_PETIN; R2R3-MYB transcription factor
STRINGXP_009801899.14e-80(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.18e-37myb domain protein 12