PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00967g08014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ARF | ||||||||
Protein Properties | Length: 709aa MW: 78042.7 Da PI: 7.4984 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 80.6 | 1.5e-25 | 131 | 232 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD Peinf101Scf00967g08014.1 131 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGKEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDA 214 99****************************963.3445679******************************************** PP EEEEE-SSSEE..EEEEE-S CS B3 80 vvFkldgrsefelvvkvfrk 99 v+F + + ++el+++v+r+ Peinf101Scf00967g08014.1 215 VLFLR--TGDGELRLGVRRA 232 ****4..4788899999986 PP | |||||||
2 | Auxin_resp | 121 | 8.8e-40 | 257 | 338 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s++++F+++YnPras+s+F+v+++k+++al +++s+GmRfkm++eted++e+r++G+vvgvsd+dpvrWp+SkWr+L Peinf101Scf00967g08014.1 257 VVNAISSRNAFNICYNPRASSSDFIVPYHKFSRALAHPFSAGMRFKMRVETEDAAEQRFTGIVVGVSDADPVRWPGSKWRCL 338 689******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-41 | 125 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.19E-42 | 125 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.48E-23 | 129 | 231 | No hit | No description |
Pfam | PF02362 | 2.4E-23 | 131 | 232 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.001 | 131 | 233 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.3E-24 | 131 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-34 | 258 | 338 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence Send to blast |
MIDLNTVDNN DDDVGDSPAA SVCMELWHAC AGPLISLPKK GSAVVYLPQG HLEHLSEYPP 60 VVYNNLRPHV FCRVVDVNLQ ADTVNDEVYA QVSLVPDNQQ IEQKWRDGDI DADTEEEDLE 120 GAGKSTTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYKQQRPSQE LVAKDLHGKE 180 WKFRHIYRGQ PRRHLLTTGW SAFVNKKKLV SGDAVLFLRT GDGELRLGVR RAAQAKTCLN 240 YLAPYSQLLN VSGIVDVVNA ISSRNAFNIC YNPRASSSDF IVPYHKFSRA LAHPFSAGMR 300 FKMRVETEDA AEQRFTGIVV GVSDADPVRW PGSKWRCLLV RWDDLDVSRH NRVSPWEIEP 360 SGSVPVPSSL VIPSGKRTRI GFPISKADFP IPRDGIAVSD FGESFRFQKV LQGQEILGMN 420 APYGGVDAHS PRQAGIRCFP GFPSSGTSTM GNSIRTLLGD TDKSRKSFGF SESHRFNKVL 480 QGQETLSSSP YGRGQAGVQV QEKSGAGVIV GIQVSSHGNR WPPPNQDNHT HPNPTSLVRA 540 SSPPSMLAFQ HPSPPVSKFL TMFNHKHGKF ETGSQASADM SENSNRDLVS DSHEDISMKE 600 DTQGISSFGF LKEQKQAHSS FRGNQNLVSM CKTSCRIFGF PLTDSKINAT GRENPSQAVY 660 SHGLEMTFLP SSDGKLQPGQ PVMTNVVGTN FRSVNDLYAA RDLLLDIAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-108 | 21 | 363 | 18 | 357 | Auxin response factor 1 |
4ldy_B | 1e-108 | 21 | 363 | 18 | 357 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00021 | PBM | Transfer from AT2G33860 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009589968.1 | 0.0 | PREDICTED: auxin response factor 3 isoform X1 | ||||
Refseq | XP_018623262.1 | 0.0 | PREDICTED: auxin response factor 3 isoform X1 | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A1S4B2E3 | 0.0 | A0A1S4B2E3_TOBAC; Auxin response factor | ||||
STRING | XP_009589968.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6101 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 0.0 | ARF family protein |