PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00962g16031.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | WRKY | ||||||||
Protein Properties | Length: 207aa MW: 23751.1 Da PI: 9.0253 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.8 | 1.6e-31 | 128 | 186 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s +prsYYrCt+++C+vkk+++r ++d+++v++tYeg Hnh+ Peinf101Scf00962g16031.1 128 LDDGFKWRKYGQKAVKNSIHPRSYYRCTHHTCNVKKQIQRHSKDTSIVVTTYEGIHNHP 186 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101447 | 2.25E-5 | 15 | 25 | No hit | No description |
PROSITE profile | PS50835 | 6.742 | 75 | 155 | IPR007110 | Immunoglobulin-like domain |
Gene3D | G3DSA:2.20.25.80 | 2.5E-32 | 115 | 186 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.76E-28 | 120 | 187 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.219 | 123 | 188 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-36 | 128 | 187 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.1E-25 | 129 | 186 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MHNYSSTSMD VGEEPPPPPP PLPPPPLLSN DLSPASFFMQ PMNNNSQVIG CDNNIDWTAL 60 LSGSINNCHE PTMMPNVSIT PRNITMMEGE QQHQQHGILS CRDKGKIRKR KYVPPRIAFH 120 TRSTEDILDD GFKWRKYGQK AVKNSIHPRS YYRCTHHTCN VKKQIQRHSK DTSIVVTTYE 180 GIHNHPCEKL METLSPFLKQ LQFLSRF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-23 | 116 | 185 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 1e-56 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019224639.1 | 8e-97 | PREDICTED: probable WRKY transcription factor 56 | ||||
Swissprot | Q8VWQ4 | 4e-54 | WRK56_ARATH; Probable WRKY transcription factor 56 | ||||
TrEMBL | A0A314KV16 | 2e-95 | A0A314KV16_NICAT; Putative wrky transcription factor 56 | ||||
STRING | XP_009764262.1 | 2e-95 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6374 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64000.1 | 2e-56 | WRKY DNA-binding protein 56 |