PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00932g02001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 147aa MW: 16391.3 Da PI: 4.7256 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 24.9 | 2.7e-08 | 2 | 50 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i ++ r tf + i+K +ELSv ++a v v+++s++gk y y Peinf101Scf00932g02001.1 2 KKIADEAIRLATFLLLKSIIFKEVHELSVTTGAVVGVLLYSPNGKPYVY 50 567888889999999999**************************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00120 | 1.78E-12 | 1 | 53 | No hit | No description |
SuperFamily | SSF55455 | 3.14E-12 | 1 | 75 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.9E-4 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.895 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-10 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MKKIADEAIR LATFLLLKSI IFKEVHELSV TTGAVVGVLL YSPNGKPYVY GSPGSFDTNT 60 NRFLNENPYD CKNNHGMAAS NREQERAWLD AESIRLDELK KKLESELQKR LTPVSSTTFP 120 TSTEASHVTN DLDVVSDPDD EEKSEAN |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14083 | 7 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29962.1 | 3e-11 | AGAMOUS-like 64 |