PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00925g18011.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

Protein Properties

Length: 285aa MW: 33045.7 Da PI: 9.7745

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00925g18011.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.6	3e-10	28	106	14	96
T-EE--HHH.HTT..---..--SEEEE.EETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 14 grlvlpkkfaeeh..ggkkeesktltl.edesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + +++p f++eh + kt l +d g+ We k+ +r +s ++ ++ W +Fv ++L+ gD+++F l+++s+f v Peinf101Scf00925g18011.1 28 NKIIMPPAFIKEHkkM----LAKTCLLqTDVAGKLWEAKI-VRENSYFFICEGEWPQFVLHHKLELGDILLFFLIDKSTF--QVI 105 34799******443....3344444066******.6888889999*********************998888..554 PP E CS B3 96 v 96 v Peinf101Scf00925g18011.1 106 V 106 4 PP
2	B3	44.9	2e-14	196	268	15	90
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 +++p +fa+ g+++ + +tl +e+g++W+v + + +r+ +t+GW F ++n++ gD+++Fkl++ +++ Peinf101Scf00925g18011.1 196 SMTIPMSFARWTGIINMK--RMTLVNEKGKKWQVDI--VHRLRRVQITEGWVAFRRDNNIYCGDTCIFKLIKGqHGG 268 599****999988555..79999*******..88888899*********************99653544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	9.02E-17	11	112	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.2E-16	12	112	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.71E-11	15	107	No hit	No description
SMART	SM01019	2.8E-4	17	110	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.9E-8	28	106	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.026	28	110	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	4.0E-17	179	274	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.75E-17	179	265	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.02E-10	183	264	No hit	No description
SMART	SM01019	5.6E-7	185	281	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-12	196	266	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.589	197	279	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MEKIPNMLLD PDKHPSFCKL LFKQCFMNKI IMPPAFIKEH KKMLAKTCLL QTDVAGKLWE 60 AKIVRENSYF FICEGEWPQF VLHHKLELGD ILLFFLIDKS TFQVIVFTQK TCKSFCERQL 120 FEELSSSSEE EQKIGTRKAK KVKTAPKKSS GIPEEEEAGT GSDENDLIKT LRYSVVNLNN 180 KDPYYETVVR KAHSISMTIP MSFARWTGII NMKRMTLVNE KGKKWQVDIV HRLRRVQITE 240 GWVAFRRDNN IYCGDTCIFK LIKGQHGGVS NVLHVQKIPK FNSLH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009622139.2	1e-116	PREDICTED: B3 domain-containing protein At5g18000-like
TrEMBL	A0A1U8FRS9	1e-113	A0A1U8FRS9_CAPAN; B3 domain-containing protein REM9-like
STRING	XP_009780425.1	1e-112	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4888	13	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31690.1	5e-12	B3 family protein