PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00909g16001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 199aa MW: 23025.5 Da PI: 9.6183 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.3 | 8.1e-18 | 16 | 64 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 i++k r+v+fskR++ ++KK +ELS+L a++ v++fs++gk y+y Peinf101Scf00909g16001.1 16 LIKSKEARYVSFSKRKASLFKKVNELSTLMRADIGVVLFSPSGKSYTYG 64 69*********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-22 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.829 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.27E-23 | 8 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-14 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-19 | 17 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-14 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-14 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MERKRSKGRQ KIEMKLIKSK EARYVSFSKR KASLFKKVNE LSTLMRADIG VVLFSPSGKS 60 YTYGSTNIEE IIDKFLQWKQ DESVDDESDS NNADNLIDVF KAFDDFRDEI VTLNELEKNR 120 RRRYRIIHPG SEIPPDKNRL VRLVECKLQL DKLKKMAIRI QELMLSTSRS VLSTSAKCHC 180 NFDLNVLPVL DEGECSGTK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015159413.1 | 9e-59 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | M1AZT9 | 4e-61 | M1AZT9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400033861 | 6e-62 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1780 | 12 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 8e-20 | AGAMOUS-like 61 |