PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf00851g02013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 273aa MW: 31379.8 Da PI: 4.5062 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.6 | 2.4e-19 | 56 | 108 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ +q+++Le+ Fe +++++ e++ ++A++lgL+ rq+ +WFqNrRa++k Peinf101Scf00851g02013.1 56 KRRLRVDQVQALEKIFEVDNKLDPERKVKIAQELGLQPRQIAIWFQNRRARWK 108 4567889*********************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.63E-19 | 51 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.0E-19 | 53 | 114 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.31E-17 | 55 | 111 | No hit | No description |
PROSITE profile | PS50071 | 16.455 | 55 | 110 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.3E-16 | 56 | 108 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-19 | 61 | 108 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.9E-5 | 81 | 90 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 85 | 108 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.9E-5 | 90 | 106 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.0E-11 | 110 | 143 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 273 aa Download sequence Send to blast |
MMKRFSFSDS SGKLLYPPEE KSMKENLAYN SEFQAMLDGL EDEDGIEESG CITGKKRRLR 60 VDQVQALEKI FEVDNKLDPE RKVKIAQELG LQPRQIAIWF QNRRARWKTK QLERDYNILK 120 ANYDALQLNY TKVEQEKEGL LTEENSSPFQ RPQEILELNT RNYEVSNKLN SDFVDSKDGS 180 SDSDSSGVMN EENYNNSLNY QPLMPKVPSY STALDHLSLS STTYTQLLDP RASSTSMSAN 240 YQQQVIGRME EQNALTTEDS CNIYSVDQAP NLY |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 102 | 110 | RRARWKTKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016460142.1 | 1e-162 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
Refseq | XP_018631361.1 | 1e-162 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
TrEMBL | A0A1S3Z7G3 | 1e-161 | A0A1S3Z7G3_TOBAC; homeobox-leucine zipper protein ATHB-6-like | ||||
STRING | PGSC0003DMT400079230 | 1e-133 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12939 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G40060.1 | 2e-41 | homeobox protein 16 |