PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00816g08011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 248aa MW: 27878 Da PI: 7.5542 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104 | 9.6e-33 | 50 | 107 | 2 | 60 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++vrY+eClkNhA+ +Ggha+DGCg+fmp+ ge+gt++alkCaAC+CHRnFHR+eve e Peinf101Scf00816g08011.1 50 STVRYRECLKNHAVGIGGHATDGCGDFMPA-GEDGTMDALKCAACNCHRNFHRKEVEGE 107 689**************************9.999*********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-22 | 52 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.1E-29 | 52 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.1E-30 | 53 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.856 | 54 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 5.38E-21 | 170 | 246 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.3E-32 | 174 | 247 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.6E-26 | 185 | 241 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MEFDEHEEHE EEIGIQNIPA VTGNNYQTQG NSVRVGSEEG LNSTGVRKSS TVRYRECLKN 60 HAVGIGGHAT DGCGDFMPAG EDGTMDALKC AACNCHRNFH RKEVEGEVVL HTPPPHLTHH 120 HQPHHTHHPQ FSPFSSYRTP HHPSGYLHVT PPPHQRPLAL PSTSREDEDM SNPSSSGGGG 180 VGSSRKRFRT KFTQEQKDKM LAFAERLGWR MQKQDEEAVQ QFCAETNVKR HVFKVWMHNN 240 KLTLGKKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-26 | 186 | 241 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU928132 | 9e-77 | CU928132.3 S.lycopersicum DNA sequence from clone SL_MboI-49I21 on chromosome 4, complete sequence. | |||
GenBank | HG975516 | 9e-77 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016501975.1 | 1e-112 | PREDICTED: uncharacterized protein LOC107820239 | ||||
Swissprot | Q6YXH5 | 2e-74 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A1S4CLI1 | 1e-111 | A0A1S4CLI1_TOBAC; uncharacterized protein LOC107820239 | ||||
STRING | XP_009758154.1 | 1e-108 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 5e-69 | homeobox protein 22 |
Publications ? help Back to Top | |||
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