PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00796g03006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 196aa MW: 22342.3 Da PI: 4.8922 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 41.3 | 1.9e-13 | 3 | 46 | 3 | 46 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 +++++ r+ +s+ + ++KKA+ELSvL d+e+ +iifs++ ++ Peinf101Scf00796g03006.1 3 SKSEIERKALLSRKVASLFKKAQELSVLSDVEIGIIIFSPDENV 46 68899999999*99**************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.3E-4 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.507 | 4 | 41 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-11 | 5 | 46 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-14 | 5 | 85 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MASKSEIERK ALLSRKVASL FKKAQELSVL SDVEIGIIIF SPDENVPITW PSETQARQRL 60 TRYLGHSEFQ RSKKLVLHEN YLREKLEARV EENRKMEERM EMEFLFNQLV MGMSIYALDA 120 RQLKGLIELA ALKKANVEER KKQLDEEKKK QLNEEDAQPV EPPVVGGESG TGSAPAEGDN 180 NNAGEEKDDE RPKDSE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ168514 | 0.0 | FJ168514.1 Petunia x hybrida type I MADS box transcription factor (MADSy9) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019248919.1 | 4e-42 | PREDICTED: agamous-like MADS-box protein AGL15 | ||||
TrEMBL | B6DT66 | 1e-109 | B6DT66_PETHY; Type I MADS box transcription factor (Fragment) | ||||
STRING | XP_009794692.1 | 3e-41 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26650.1 | 6e-12 | AGAMOUS-like 36 |