PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00782g10028.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WRKY
Protein Properties Length: 548aa    MW: 60836.5 Da    PI: 8.2601
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00782g10028.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.65.3e-33210267260
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                               +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkver+  d++++ei+Y+g+Hnh+k
  Peinf101Scf00782g10028.1 210 EDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERNL-DGHITEIVYKGSHNHPK 267
                               8****************************************.***************85 PP
2WRKY1061.9e-33375433159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  Peinf101Scf00782g10028.1 375 LDDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCPVRKHVERASHDLRAVITTYEGKHNHD 433
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-27204268IPR003657WRKY domain
PROSITE profilePS5081123.388204268IPR003657WRKY domain
SuperFamilySSF1182901.1E-24205268IPR003657WRKY domain
SMARTSM007743.1E-35209267IPR003657WRKY domain
PfamPF031068.8E-25210266IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-37360435IPR003657WRKY domain
SuperFamilySSF1182902.48E-29367435IPR003657WRKY domain
PROSITE profilePS5081138.067370435IPR003657WRKY domain
SMARTSM007744.3E-39375434IPR003657WRKY domain
PfamPF031068.6E-26376433IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MASSGGNMNT FMNSFTSNYS FSSSQFINSS FSDLISDNTD NNNNMRSTND SFNDQNNIIP  60
KFKSFPPSSI SPSSPSSYLN FPPSLSPSVL LDSPVLFNNS NTLPSPTTGS FGNMNSKDVN  120
NSRTSDFSFQ SRPATSSSMF QSSAPRNSLE DLMTRQQHAN QQTEYSAAKT GVKSEVAPLQ  180
SYSSQENMQS NPAPIHYTQP SQYVREQKAE DGYNWRKYGQ KQVKGSENPR SYYKCTFPNC  240
PTKKKVERNL DGHITEIVYK GSHNHPKPQS TRRSSSQSIQ NLAYSNNLDL TNQPNSFLEN  300
AQRDSLAVTE NSSASFGDED IDQGSPISKS GEDDENEPEA KRWKGDNENE VISSASRTVR  360
EPRIVVQTTS DIDILDDGYR WRKYGQKVVK GNPNPRSYYK CTFTGCPVRK HVERASHDLR  420
AVITTYEGKH NHDVPAARGS GSYAMNKPPS GNTNSMPVVP RPSVLANNNS NQGMNFNDTF  480
FNTRVAPTTQ IQPPVTLQML QGSGSSNYSG YGTSSGSYMN QMQPMNNPPK LISKEEPKDD  540
LFFSSFLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-33210436878Probable WRKY transcription factor 4
2lex_A3e-33210436878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4562720.0AY456272.1 Nicotiana attenuata WRKY6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615565.10.0PREDICTED: probable WRKY transcription factor 26 isoform X2
RefseqXP_016482656.10.0PREDICTED: probable WRKY transcription factor 26 isoform X2
SwissprotQ6IEQ71e-126WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLD2KU320.0D2KU32_NICBE; Double WRKY type transfactor
STRINGXP_009615564.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-120WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]