PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00776g00029.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 600aa MW: 69528.8 Da PI: 8.1222

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00776g00029.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.5	3.8e-17	72	164	2	90
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle 82 +Y ++Ak + Fsvr+++ + + i+ r++vC + g+++++k +++++r r+++r++C+ak+ v k+ + +w v ++ Peinf101Scf00776g00029.1 72 CYVNFAKLIDFSVRRDRYFGGaEYHMGIYIRDYVCHRAGSPRPQKVVEKERQRDRKSSRCNCNAKMSVAKKIidgTTRWIVVYFD 156 79***********9987664556679*************99999999***********999777889**** PP FAR1 83 leHnHela 90 + HnHel Peinf101Scf00776g00029.1 157 NTHNHELL 164 ****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.3E-14	72	164	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-12	272	324	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence Send to blast
MKVINNTSNG SIVEVSRSQC PCDDNECYIH GEIVGGITER SNEELRSENV DIGNTDLHKG 60 KFFNSDDEAY NCYVNFAKLI DFSVRRDRYF GGAEYHMGIY IRDYVCHRAG SPRPQKVVEK 120 ERQRDRKSSR CNCNAKMSVA KKIIDGTTRW IVVYFDNTHN HELLNDKEVK YLSAYRNIDY 180 IDQKRISLLA KAGCPISLIR RVLELERVNF LQSESSTNIE HDAFEQLKIC KILKDKDVDF 240 QYDFTVDSCL RLENIIWAFG GSIRAYELLG DVVVFYTTYR LNRYEMPLRV WVGVNNHGNT 300 IFFGCALLRN EKASSFSWAL KDIFFAGMTT TGRSESINAY LKRFLHARTS LKEFVQQVGT 360 AISIRNQAGE EATMRQKYCN PQIKTFMPME KHASKVLSSF AFKLLQDEMI LSAEYGLFSN 420 NDGSYIVRHY SKTDLGGGGI MSFGIHKKRL FNIPGNRILC RQSIQALTAH NYFMLLEKYL 480 LARWRQENSL VPQFTHMMNS GSNDNEFQSL QSMVKDLTHE SMKTKSRLEY AKKEVERVLQ 540 IVQYLLENEQ VNEEHGHVAI SHSAEDNSRD EDYHIEDPQQ SQKKRKEERK KDSQRMDKEA

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence Send to blast

MKVINNTSNG SIVEVSRSQC PCDDNECYIH GEIVGGITER SNEELRSENV DIGNTDLHKG  60
KFFNSDDEAY NCYVNFAKLI DFSVRRDRYF GGAEYHMGIY IRDYVCHRAG SPRPQKVVEK  120
ERQRDRKSSR CNCNAKMSVA KKIIDGTTRW IVVYFDNTHN HELLNDKEVK YLSAYRNIDY  180
IDQKRISLLA KAGCPISLIR RVLELERVNF LQSESSTNIE HDAFEQLKIC KILKDKDVDF  240
QYDFTVDSCL RLENIIWAFG GSIRAYELLG DVVVFYTTYR LNRYEMPLRV WVGVNNHGNT  300
IFFGCALLRN EKASSFSWAL KDIFFAGMTT TGRSESINAY LKRFLHARTS LKEFVQQVGT  360
AISIRNQAGE EATMRQKYCN PQIKTFMPME KHASKVLSSF AFKLLQDEMI LSAEYGLFSN  420
NDGSYIVRHY SKTDLGGGGI MSFGIHKKRL FNIPGNRILC RQSIQALTAH NYFMLLEKYL  480
LARWRQENSL VPQFTHMMNS GSNDNEFQSL QSMVKDLTHE SMKTKSRLEY AKKEVERVLQ  540
IVQYLLENEQ VNEEHGHVAI SHSAEDNSRD EDYHIEDPQQ SQKKRKEERK KDSQRMDKEA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009596355.1	1e-177	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
TrEMBL	A0A1J6K8V5	1e-165	A0A1J6K8V5_NICAT; Uncharacterized protein
STRING	XP_009596355.1	1e-176	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7183	7	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	2e-75	FAR1-related sequence 10