PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00755g05002.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 167aa    MW: 19043.1 Da    PI: 4.3874
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00755g05002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.56.1e-17350249
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              +ien+  r+ tfskRr+g+ KKA+EL  +Cd+++ +i fs+tgk + +
  Peinf101Scf00755g05002.1  3 KIENEDDRYATFSKRRTGLYKKASELVRMCDVDIGIIHFSPTGKPFSF 50
                              59*****************************************96655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-14153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.525154IPR002100Transcription factor, MADS-box
PfamPF003191.7E-21350IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-21366IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-81631IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-83152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MIKIENEDDR YATFSKRRTG LYKKASELVR MCDVDIGIIH FSPTGKPFSF VHPTVESIVD  60
RFLSPNGQLS ESSRLVAAHS RNRVNELNNR LDEYDIIEDA VSDQNFEPDE MNEADQRSWW  120
KSIEDFNEDE VTKFEVWLNS VVVGMTNRLT LLENGASSSA QAPPIAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595152.12e-72PREDICTED: agamous-like MADS-box protein AGL29
RefseqXP_016446657.12e-72PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A1S3Y4475e-71A0A1S3Y447_TOBAC; agamous-like MADS-box protein AGL29
STRINGXP_009595152.18e-72(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-28AGAMOUS-like 61