PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00752g02002.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 721aa MW: 81254 Da PI: 8.2891

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00752g02002.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.7	1.4e-11	70	150	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fY+e+A + GF+++k + kk ++ + i r++ C + +r +++++ + gCka + ++ + + wev ++ Peinf101Scf00752g02002.1 70 DFYQEHALQNGFRITKYSCKKDsNEYDLISARRLSCHRARNRGRDQNS-----------NNGCKAGIYATLCTdRTSWEVRSVTV 143 6**************999984566778999**9999887766...........78*******9899***** PP FAR1 84 eHnHela 90 eHnH+l Peinf101Scf00752g02002.1 144 EHNHDLE 150 ***96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-7	70	150	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	11.214	461	499	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.6E-6	474	501	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	8.9E-6	475	498	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence Send to blast
MDVEESNILC QILGLHRDDS LFDSRSNICT TGKNSEPNVA TGESQGVNPR APAGGPTVGM 60 NFPSLEAMFD FYQEHALQNG FRITKYSCKK DSNEYDLISA RRLSCHRARN RGRDQNSNNG 120 CKAGIYATLC TDRTSWEVRS VTVEHNHDLE TRFTSLMPPR MKLSHALRRD LVAANTAGVS 180 PSPSFRTMDI MNGGAENMGC LPSDSRKGVD QDRRLKLIPG DAEVLNQFFQ RMRAMDNKFV 240 YEMDLDNEGR LRNVMWIHPQ AVLAYQQFHD VVRSEFKGVR EKDAVVEQFE SIIYGSMSVV 300 EFERRWDQFI RDPRLQDRRW LEKIYSTRSQ WVPVYLKDTF WAGISCTKRS NSIHPFLDQF 360 INRKADLQTF AKQYEVAIKS KMEKELKEEE SSKDTRLISL TGSPWEKQLR ACLTRNIYDL 420 HRKQIQESVS CRYVGGNEQD EVETFSVSDT GMGLNYAGTD YIMTVEYKRD GQHLDCSCKM 480 FNTDGIICRH VILVLQKYGV ERLNDRYILR RWRGDISRPH LWAYVSTGYP QMSDEFQRLQ 540 GLKGIFYQCA ERAIQSDQLT DKLKLDLMAN FYKPNNDDPI PDDIHDVEDH RSDAPILDAN 600 FLRIEGRPCL VRVRDKWNKR RRANGSRGGR GKSRGGASGA GRGSGGVDAS DSNYGVDAGR 660 GNGAVDLTTV ARGGRRGACR AGRATCGVDA SNGNGGVDAS RGDGAVDATS GGGNSGVDAR 720 R

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence Send to blast

MDVEESNILC QILGLHRDDS LFDSRSNICT TGKNSEPNVA TGESQGVNPR APAGGPTVGM  60
NFPSLEAMFD FYQEHALQNG FRITKYSCKK DSNEYDLISA RRLSCHRARN RGRDQNSNNG  120
CKAGIYATLC TDRTSWEVRS VTVEHNHDLE TRFTSLMPPR MKLSHALRRD LVAANTAGVS  180
PSPSFRTMDI MNGGAENMGC LPSDSRKGVD QDRRLKLIPG DAEVLNQFFQ RMRAMDNKFV  240
YEMDLDNEGR LRNVMWIHPQ AVLAYQQFHD VVRSEFKGVR EKDAVVEQFE SIIYGSMSVV  300
EFERRWDQFI RDPRLQDRRW LEKIYSTRSQ WVPVYLKDTF WAGISCTKRS NSIHPFLDQF  360
INRKADLQTF AKQYEVAIKS KMEKELKEEE SSKDTRLISL TGSPWEKQLR ACLTRNIYDL  420
HRKQIQESVS CRYVGGNEQD EVETFSVSDT GMGLNYAGTD YIMTVEYKRD GQHLDCSCKM  480
FNTDGIICRH VILVLQKYGV ERLNDRYILR RWRGDISRPH LWAYVSTGYP QMSDEFQRLQ  540
GLKGIFYQCA ERAIQSDQLT DKLKLDLMAN FYKPNNDDPI PDDIHDVEDH RSDAPILDAN  600
FLRIEGRPCL VRVRDKWNKR RRANGSRGGR GKSRGGASGA GRGSGGVDAS DSNYGVDAGR  660
GNGAVDLTTV ARGGRRGACR AGRATCGVDA SNGNGGVDAS RGDGAVDATS GGGNSGVDAR  720
R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7498	2	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	4e-42	FAR1-related sequence 1