PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00735g00009.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NAC
Protein Properties Length: 464aa    MW: 52548.3 Da    PI: 5.568
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00735g00009.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.16.1e-52772041128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                               l+pGfrFhPtdeelv +yL++k+ +k++++ ++++e+d+yk+ePw+L   +++k+++ ewyfFs+ d+ky +g+r nrat +gyW
  Peinf101Scf00735g00009.1  77 LAPGFRFHPTDEELVRYYLRRKACAKPFRF-QAVSEIDVYKSEPWELAefASLKTRDLEWYFFSPVDRKYGNGSRLNRATGKGYW 160
                               579*************************99.88**************84347777888*************************** PP

                       NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               katgkd++v + k++++g+kktLvf++grap+g++t+Wvmheyrl
  Peinf101Scf00735g00009.1 161 KATGKDRPVRH-KSQTIGMKKTLVFHSGRAPDGKRTNWVMHEYRL 204
                               ***********.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-6174227IPR003441NAC domain
PROSITE profilePS5100557.78477227IPR003441NAC domain
PfamPF023654.7E-2879204IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
GVLENIQNFH FLGFFVYVYV VSEVGFLERT QKFHFLDFLA NKMEQEGAAL VIAPPSTAVS  60
TPVATVAKRG VTPPTSLAPG FRFHPTDEEL VRYYLRRKAC AKPFRFQAVS EIDVYKSEPW  120
ELAEFASLKT RDLEWYFFSP VDRKYGNGSR LNRATGKGYW KATGKDRPVR HKSQTIGMKK  180
TLVFHSGRAP DGKRTNWVMH EYRLADEELE RAGVVQDAFV LCRIFQKSGL GPPNGDRYAP  240
FIEEEWDDDT PLLIPGGEAE DDVANGDEAR VDGNDLDQDA LQKAKAPCQS ENLLEPRTIP  300
FVCKRERSED PELSLAQSKR SKHDDPSSSH ANGSEDSTTS QQDPPTTMMT TNYSPTLLAF  360
PLLEPIEPKE NQPSNALTFD SSNLEKSVPP GYLKFISNLE NEILNVSMER ETLKIEVMRA  420
QAMINILQSR VDLLNKENED LRRLVRGVHR RRTLVLESSI LETF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-517622719168NAC domain-containing protein 19
3swm_B5e-517622719168NAC domain-containing protein 19
3swm_C5e-517622719168NAC domain-containing protein 19
3swm_D5e-517622719168NAC domain-containing protein 19
3swp_A5e-517622719168NAC domain-containing protein 19
3swp_B5e-517622719168NAC domain-containing protein 19
3swp_C5e-517622719168NAC domain-containing protein 19
3swp_D5e-517622719168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5098670.0AF509867.1 Petunia x hybrida nam-like protein 4 (NH4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619467.10.0PREDICTED: NAC domain-containing protein 78-like
SwissprotQ9SQX91e-112NAC50_ARATH; NAC domain containing protein 50
TrEMBLQ8LRM10.0Q8LRM1_PETHY; Nam-like protein 4
STRINGXP_009619467.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31402448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.21e-114NAC domain containing protein 50
Publications ? help Back to Top
  1. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]