PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00723g08004.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

Trihelix

Protein Properties

Length: 491aa MW: 56894 Da PI: 6.4059

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00723g08004.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.6	1.2e-21	383	465	1	83
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnk.rykkikegekkrtsessstcpyfd 83 rW++ ev aLi++r+++e+++++ g+ k+ lWee+sk m++ gf+rs+ +Ckekwen++k kk+ke+ ++ + ++ +c+ fd Peinf101Scf00723g08004.1 383 RWPQAEVDALIQIRTSLESKFQEpGSTKGVLWEEISKSMASMGFHRSARRCKEKWENVHKcSVKKTKEITRE--QLDHGNCSTFD 465 8*******************8799******************************99568999999988..46677899887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.085	376	441	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.0E-4	378	444	IPR009057	Homeodomain-like
SMART	SM00717	0.006	380	443	IPR001005	SANT/Myb domain
CDD	cd12203	2.07E-21	382	442	No hit	No description
Pfam	PF13837	3.1E-15	382	454	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MQSNFEMAGI HHQRNQQPQM EQHQQQQPRF IVENASTSSP FFPINTNYHH FSQQQQQQQA 60 HPNILQQIHH LPFTQQFFQY QHPNYRSILD HQQQQHQEIR ALEASPEFFP LSFKLGMEDS 120 STKGGSCEGE RQEDALIRGS EQYCTEARQT SLAVSHCWQN QEDSAIKQPF WKPLCAEFSN 180 GNNNNSNESE NKLQEVDQEM YSTEEIIRHG QQQPEQHHII KSLEDTSKCR VVFGELEAIY 240 ATKANADNAA AAAATNIHRI ASESVLTAED LPMMKKGRSN SNSMARFFES LVKKLVNHQE 300 NLQRRFMETI ERLDQERKER EEAWREQELA KVQKETAARA HERTLALSRE ATLVSYLEKL 360 TGQKINFHED RNVTSLEKLS NKRWPQAEVD ALIQIRTSLE SKFQEPGSTK GVLWEEISKS 420 MASMGFHRSA RRCKEKWENV HKCSVKKTKE ITREQLDHGN CSTFDHENVE NKNGSGKEDM 480 EELKEGDKSE S

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MQSNFEMAGI HHQRNQQPQM EQHQQQQPRF IVENASTSSP FFPINTNYHH FSQQQQQQQA  60
HPNILQQIHH LPFTQQFFQY QHPNYRSILD HQQQQHQEIR ALEASPEFFP LSFKLGMEDS  120
STKGGSCEGE RQEDALIRGS EQYCTEARQT SLAVSHCWQN QEDSAIKQPF WKPLCAEFSN  180
GNNNNSNESE NKLQEVDQEM YSTEEIIRHG QQQPEQHHII KSLEDTSKCR VVFGELEAIY  240
ATKANADNAA AAAATNIHRI ASESVLTAED LPMMKKGRSN SNSMARFFES LVKKLVNHQE  300
NLQRRFMETI ERLDQERKER EEAWREQELA KVQKETAARA HERTLALSRE ATLVSYLEKL  360
TGQKINFHED RNVTSLEKLS NKRWPQAEVD ALIQIRTSLE SKFQEPGSTK GVLWEEISKS  420
MASMGFHRSA RRCKEKWENV HKCSVKKTKE ITREQLDHGN CSTFDHENVE NKNGSGKEDM  480
EELKEGDKSE S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009609923.1	1e-179	PREDICTED: trihelix transcription factor GT-2-like
Refseq	XP_016436030.1	1e-179	PREDICTED: trihelix transcription factor GT-2-like
TrEMBL	A0A1S3X7P1	1e-178	A0A1S3X7P1_TOBAC; trihelix transcription factor GT-2-like
STRING	XP_009609923.1	1e-178	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11622	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	7e-38	Trihelix family protein