PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00719g07017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ARF | ||||||||
Protein Properties | Length: 877aa MW: 96992.7 Da PI: 5.3867 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.6 | 1.4e-24 | 146 | 247 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+lt sd++++g +++p++ ae+ ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+ Peinf101Scf00719g07017.1 146 FCKTLTASDTSTHGGFSVPRRAAEKLfppldySMQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDS 229 99*********************999*****9555554.49******************************************** PP EEEEE-SSSEE..EEEEE-S CS B3 80 vvFkldgrsefelvvkvfrk 99 v+F ++++ +l+++v+r+ Peinf101Scf00719g07017.1 230 VLFI--RDEKSQLLLGVRRA 247 ****..45677789999997 PP | |||||||
2 | Auxin_resp | 71.6 | 2.3e-24 | 272 | 341 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPra++seFv++++k++k+++ +++svGmR ++Gt+vg+sdldp+rWp+SkWr+L+ Peinf101Scf00719g07017.1 272 AAHAAANRSTFTIFYNPRACPSEFVIPLAKYRKSVYgTQLSVGMR--------------YMGTIVGISDLDPLRWPGSKWRCLQ 341 79*********************************999******8..............69**********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.09E-47 | 133 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-42 | 139 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.15E-22 | 145 | 246 | No hit | No description |
Pfam | PF02362 | 4.9E-22 | 146 | 247 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.211 | 146 | 248 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-24 | 146 | 248 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.9E-19 | 272 | 341 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 21.918 | 810 | 877 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.16E-5 | 829 | 877 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 877 aa Download sequence Send to blast |
MGSVEEKVKP GSLVSGAHTL LEEMKLLKEM QDHSGARKLI NSELWHACAG PLVTLPQVGS 60 LVYYFPQGHS EQVAVSTNRT ATSQIPNYPN LASQLLCQVH NVTLHADKET DEIYAQMSLQ 120 PVNSEKDVFP IPDFGLKPSK HPTEFFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDYSMQ 180 PPTQELVVRD LHDNTWTFRH IYRGQPKRHL LTTGWSMFVG AKRLRAGDSV LFIRDEKSQL 240 LLGVRRANRQ QTSLPSSVLS ADSMHIGVLA AAAHAAANRS TFTIFYNPRA CPSEFVIPLA 300 KYRKSVYGTQ LSVGMRYMGT IVGISDLDPL RWPGSKWRCL QVEWDEPGCG DKQNRVSPWE 360 VETPESLFIF PSLTAGLKRP FQSAFLGAQT EWDSLMHRPF MCVPENVYGD IQSSSISNLW 420 SEQLMKMLIR PPGVTGNQCG LPTVQDIKVA IPQEARNVIQ AAGNQKPELS TVEDTSTQSE 480 TNSQVILNQP GVVNSISSMQ TTLLNKSQPP EKVGTDIVGL SSELTKESSD TSDKLDQFQS 540 IGQCNEDKVN IKPISPHNLP TDATVSHQNS LSQLQASPWL IQAQLESQIP HNPQLESTGG 600 NNILQCSNNN EWNMSTVQSA AEYLRCPVSS STLTKHEHSF MLPDTVGSGL APLGEDLWDH 660 QLNDVKCFSQ TNLHVPLLTQ GIPNMHFLPD SYGLKDLSEE SHNQSDIYSC LNFDSNSGST 720 VIDNSVSSAV LDEFCTYKHT DFQNPSDFLL GNISSSQDVQ SQITSASLAD SHFSVQEFAD 780 HSGGASSSNV NFDENLLQNS SWQQVAPRVR TYTKIQKAGS VGRSIDVSGF KNYDELRSEI 840 ERMFGLEGLL NDLRGSGWKL VYVDYENDVL LVGDDPW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 366 | 5 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM195248 | 0.0 | HM195248.1 Solanum lycopersicum auxin response factor 5 (ARF5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019263965.1 | 0.0 | PREDICTED: auxin response factor 5 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A314L7C1 | 0.0 | A0A314L7C1_NICAT; Auxin response factor | ||||
STRING | XP_009616118.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5859 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |